Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F19
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30750.1 68414.m03758 expressed protein                             31   0.66 
At5g36880.1 68418.m04418 acetyl-CoA synthetase, putative / aceta...    29   3.5  
At2g17110.1 68415.m01974 expressed protein                             28   6.1  
At1g03340.1 68414.m00313 expressed protein similar to hypothetic...    27   8.1  

>At1g30750.1 68414.m03758 expressed protein
          Length = 212

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 62  IMSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSK-DSKEPANEDLTGLSGP 214
           ++SS  E +Q+     P    GG+ + Q++    +  S  P N+ LTGLS P
Sbjct: 20  LVSSISEAAQVTKITTPLEPTGGVSVNQNQPILGQPSSSSPVNQPLTGLSQP 71


>At5g36880.1 68418.m04418 acetyl-CoA synthetase, putative /
           acetate-CoA ligase, putative similar to SP|P27550
           (Escherichia coli) and gi:8439651 (Homo sapiens);
           contains Pfam AMP-binding enzyme domain PF00501
          Length = 693

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -2

Query: 311 RTVGHLSCFWSEVCITFVWSSSNGDRIGRXREKAQRDQSSLHW 183
           R++   + FWS++   F W    GD++       ++   S+ W
Sbjct: 66  RSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEW 108


>At2g17110.1 68415.m01974 expressed protein
          Length = 733

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/34 (26%), Positives = 23/34 (67%)
 Frame = +3

Query: 336 RPSPNIQQPRK*NAAHLITKRLIHNNGIENVRQS 437
           RPS ++++    +  H++ K+++ ++G + VR+S
Sbjct: 263 RPSVSVEKEEMEHEVHIVEKKIVEDSGGDEVRKS 296


>At1g03340.1 68414.m00313 expressed protein similar to hypothetical
           protein GB:AAC79114
          Length = 385

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 282 PEAAQVAHSPKPPAHINLRPSPNIQQPR 365
           PE A     PK P    L+PSP  Q P+
Sbjct: 212 PEDAVTLAPPKSPKKTRLKPSPKKQNPK 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,487,064
Number of Sequences: 28952
Number of extensions: 272541
Number of successful extensions: 779
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)