Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_F18
(528 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 300 2e-81
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 300 2e-81
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 300 2e-81
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 300 2e-81
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 239 3e-63
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 103 3e-22
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 30 4.4
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 30 4.4
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 30 4.4
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 30 4.4
BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein. 30 5.8
BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein. 30 5.8
AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein. 30 5.8
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 29 7.6
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 300 bits (736), Expect = 2e-81
Identities = 136/174 (78%), Positives = 153/174 (87%)
Frame = +3
Query: 6 KYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNA 185
KYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNA
Sbjct: 26 KYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNA 85
Query: 186 SNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKT 365
SNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K
Sbjct: 86 SNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKI 145
Query: 366 ARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGKELEFYL 527
+KY R++ AK+ L EQF G+LLAC+ASRPGQCGRADGY+L GKELEFYL
Sbjct: 146 QKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYL 199
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 300 bits (736), Expect = 2e-81
Identities = 136/174 (78%), Positives = 153/174 (87%)
Frame = +3
Query: 6 KYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNA 185
KYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNA
Sbjct: 26 KYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNA 85
Query: 186 SNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKT 365
SNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K
Sbjct: 86 SNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKI 145
Query: 366 ARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGKELEFYL 527
+KY R++ AK+ L EQF G+LLAC+ASRPGQCGRADGY+L GKELEFYL
Sbjct: 146 QKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYL 199
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 300 bits (736), Expect = 2e-81
Identities = 136/174 (78%), Positives = 153/174 (87%)
Frame = +3
Query: 6 KYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNA 185
KYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNA
Sbjct: 26 KYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNA 85
Query: 186 SNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKT 365
SNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K
Sbjct: 86 SNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKI 145
Query: 366 ARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGKELEFYL 527
+KY R++ AK+ L EQF G+LLAC+ASRPGQCGRADGY+L GKELEFYL
Sbjct: 146 QKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYL 199
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 300 bits (736), Expect = 2e-81
Identities = 136/174 (78%), Positives = 153/174 (87%)
Frame = +3
Query: 6 KYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNA 185
KYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRKTRIIDVVYNA
Sbjct: 26 KYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNA 85
Query: 186 SNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKT 365
SNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K
Sbjct: 86 SNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKI 145
Query: 366 ARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGKELEFYL 527
+KY R++ AK+ L EQF G+LLAC+ASRPGQCGRADGY+L GKELEFYL
Sbjct: 146 QKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYL 199
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 239 bits (586), Expect = 3e-63
Identities = 119/174 (68%), Positives = 136/174 (78%)
Frame = +3
Query: 6 KYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNA 185
KYELGRPAANT++GP+RIH+VR RGG C TRKTRIIDVVYNA
Sbjct: 26 KYELGRPAANTKIGPRRIHTVRVRGG-------------------C-TRKTRIIDVVYNA 65
Query: 186 SNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKT 365
SNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K
Sbjct: 66 SNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKI 125
Query: 366 ARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGKELEFYL 527
+KY R++ AK+ L EQF G+LLAC+ASRPGQCGRADGY+L GKELEFYL
Sbjct: 126 QKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYL 179
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 103 bits (248), Expect = 3e-22
Identities = 47/71 (66%), Positives = 56/71 (78%)
Frame = +3
Query: 315 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGY 494
LT EE I+NKKRS+K +KY R++ AK+ L EQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 495 ILXGKELEFYL 527
+L GKELEFYL
Sbjct: 61 VLEGKELEFYL 71
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.3 bits (65), Expect = 4.4
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 294 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 425
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.3 bits (65), Expect = 4.4
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 294 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 425
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.3 bits (65), Expect = 4.4
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 294 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 425
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.3 bits (65), Expect = 4.4
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 294 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 425
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein.
Length = 446
Score = 29.9 bits (64), Expect = 5.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 463 RLATQASKRPVWNCSXRAPSTL 398
R A AS+RP+W+ S RAPS L
Sbjct: 329 RSAPAASERPLWDTSLRAPSCL 350
>BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein.
Length = 391
Score = 29.9 bits (64), Expect = 5.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 463 RLATQASKRPVWNCSXRAPSTL 398
R A AS+RP+W+ S RAPS L
Sbjct: 69 RSAPAASERPLWDTSLRAPSCL 90
>AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein.
Length = 634
Score = 29.9 bits (64), Expect = 5.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 463 RLATQASKRPVWNCSXRAPSTL 398
R A AS+RP+W+ S RAPS L
Sbjct: 506 RSAPAASERPLWDTSLRAPSCL 527
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 29.5 bits (63), Expect = 7.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 160 RVLRVEHSDPQEKLPVSRRSARYLVFPPRERTE 62
R R E PQ+ + V RS R L PPR RT+
Sbjct: 411 RTARCELRSPQQPVSVPGRSPRALWRPPRRRTQ 443
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,327,672
Number of Sequences: 237096
Number of extensions: 1456528
Number of successful extensions: 3450
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3450
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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