Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F18
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   225   2e-59
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   221   2e-58
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   1.9  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   2.6  
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    28   4.5  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  225 bits (549), Expect = 2e-59
 Identities = 113/185 (61%), Positives = 137/185 (74%), Gaps = 11/185 (5%)
 Frame = +3

Query: 6   KYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYN 182
           KYE+GR  ANT+L   + +  +R RGGN K+RALRLDTGN+SWGSE +TRKTR++DVVYN
Sbjct: 26  KYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYN 85

Query: 183 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EAEEAII- 341
           ASNNELVRTKTLVK+AIV VDA PF+QWY SHY + LGR KK A  T     E EEA + 
Sbjct: 86  ASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVA 145

Query: 342 ---NKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGKE 512
                K+S    RK  +RQ    ++  + +QF +GRLLAC++SRPGQCGRADGYIL GKE
Sbjct: 146 APEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKE 205

Query: 513 LEFYL 527
           LEFY+
Sbjct: 206 LEFYM 210


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  221 bits (541), Expect = 2e-58
 Identities = 110/175 (62%), Positives = 128/175 (73%), Gaps = 1/175 (0%)
 Frame = +3

Query: 6   KYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYN 182
           KYELGR  ANT+L   + +  +R RGGN K+RALRLDTGNFSWGSE  TRKTRI+DV YN
Sbjct: 26  KYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYN 85

Query: 183 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQK 362
           ASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+S  
Sbjct: 86  ASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNH 141

Query: 363 TARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGKELEFYL 527
             RK   RQ    ++  L EQF +GRLLAC+ASRPGQCGRADGYIL GKELEFY+
Sbjct: 142 VQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYM 196


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 198 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 326
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 78  GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 239
           GG T  R +R      +    C    +++ ++V++ + NELV T    +N I+V
Sbjct: 353 GGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIV 406


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 208 VRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPP 77
           +R+ S LD+L     +RVL V H+    +LPV   + RYL   P
Sbjct: 580 IRSFSALDSLRHLKQLRVLDVSHNHICGELPVD--TTRYLCSSP 621


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,790
Number of Sequences: 28952
Number of extensions: 194899
Number of successful extensions: 562
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)