Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F14
         (465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             207   3e-54
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)              29   1.9  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)                     28   3.3  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     28   3.3  
SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)                  27   5.8  
SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)                 27   5.8  
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)                 27   5.8  
SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)                  27   5.8  
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)                     27   5.8  
SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)                   27   5.8  
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)                  27   5.8  
SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)                     27   7.7  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  207 bits (506), Expect = 3e-54
 Identities = 95/116 (81%), Positives = 108/116 (93%)
 Frame = +3

Query: 117 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 296
           MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT DWKGLKITV
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60

Query: 297 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVXGIAKIM 464
            LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV  +AK+M
Sbjct: 61  CLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVTNVAKVM 116


>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
          Length = 302

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 285 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 416
           ++ ++     RQ +   +PSA    IR  +E PR  +K  N+KH
Sbjct: 97  RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 392 TVTGRLLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLPVTCGLGNVITH 240
           +++  +  GSD+K CC      G  + LG+  +   +HSD++  P+   L  +  H
Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLH 163


>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
          Length = 671

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +3

Query: 189 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 359
           T  L P ++ PLGL PKK+  D  ++   S  KGL +   +++++   + A +  A + I
Sbjct: 369 TPPLVPFRVSPLGLVPKKLPGDFRLSHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 428


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +3

Query: 177  EVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPS 344
            E+G T +    +  LG  PK V +D     +DW    +       +    IA+ PS
Sbjct: 1793 ELGITDAEGNYVDSLGADPKAVSNDYVGYATDWVNNNLPENAITNSTWTGIALGPS 1848


>SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 213 GPLGLSPKKVGDDIAKATSDWKG 281
           GPLG+  +++ D    ++SDW G
Sbjct: 337 GPLGMEDRRIQDSQINSSSDWDG 359


>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
          Length = 453

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -3

Query: 340 GTTAIWACLF*TVSCTVILRP--FQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT 167
           G   IW     T   T+ L+   F +L  +A  +     D+ +G I    + +AP S   
Sbjct: 271 GALRIWTVAKSTPVATIRLKKTGFHALAVIATQNTNSRTDQSQGAISSTSEAIAPPSMSN 330

Query: 166 HRKFTI 149
            + FT+
Sbjct: 331 KQDFTL 336


>SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
          Length = 421

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 305 CQLHSDLETLPVTCGLGNVI 246
           C++HS  ET P+T  + N+I
Sbjct: 118 CKIHSFFETFPITINIANLI 137


>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
          Length = 969

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 189 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 359
           T  L P ++ PLGL PKK+  D  +    S  KGL +   +++++   + A +  A + I
Sbjct: 465 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 524


>SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 280 PFQSLVALAMSS--PTFLGDRPRGPILGAKDDVAPTSP 173
           PF +L+    SS    F+ DRPRGP  G  D +    P
Sbjct: 360 PFNALIVGPTSSGKTRFIVDRPRGPFRGKFDYIVLVCP 397


>SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)
          Length = 291

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -3

Query: 340 GTTAIWACLF*TVSCTVILRP--FQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT 167
           G   IW     T   T+ L+   F +L  +A  +     D+ +G I    + +AP S   
Sbjct: 109 GALRIWTVAKSTPVATIRLKKTGFHALAVIATQNTNSRTDQSQGAISSTSEAIAPPSMSN 168

Query: 166 HRKFTI 149
            + FT+
Sbjct: 169 KQDFTL 174


>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
          Length = 646

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 135 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 245
           P+     +L+C G E   TSS+ P +G LG   K  G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632


>SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 189 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 359
           T  L P ++ PLGL PKK+  D  +    S  KGL +   +++++   + A +  A + I
Sbjct: 48  TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 107


>SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)
          Length = 386

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 189 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 359
           T  L P ++ PLGL PKK+  D  +    S  KGL +   +++++   + A +  A + I
Sbjct: 263 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 322



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +3

Query: 141 EIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQN 314
           E   V    +G  +    +    + PLGL PKK+  D  +    S  KGL +   +++++
Sbjct: 306 EHSTVRYATIGDAISKIRAAGRGVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEH 365

Query: 315 RQAQIAVVPSAAALI 359
              + A +  A + I
Sbjct: 366 STVRYATIGDAISKI 380


>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
          Length = 944

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 189 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 359
           T  L P ++ PLGL PKK+  D  +    S  KGL +   +++++   + A +  A + I
Sbjct: 444 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 503


>SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)
          Length = 1072

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 306 VQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVXGIAK 458
           V+N QA+  VV S     I  +KE   D+K +  ++   N +L++V G A+
Sbjct: 727 VENCQAKRKVVRSNCTRNINKIKELLPDKKNKSKVRQFAN-NLDEVRGKAR 776


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,637,675
Number of Sequences: 59808
Number of extensions: 283180
Number of successful extensions: 719
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)