Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_F14
(465 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 181 2e-46
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 180 6e-46
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 180 6e-46
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 27 4.7
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr... 27 4.7
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 27 6.2
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 27 6.2
At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putat... 27 6.2
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 27 8.3
At1g04650.1 68414.m00462 hypothetical protein 27 8.3
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 181 bits (440), Expect = 2e-46
Identities = 86/117 (73%), Positives = 102/117 (87%), Gaps = 1/117 (0%)
Frame = +3
Query: 117 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 293
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 294 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVXGIAKIM 464
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IAKIM
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIM 117
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 180 bits (437), Expect = 6e-46
Identities = 85/117 (72%), Positives = 102/117 (87%), Gaps = 1/117 (0%)
Frame = +3
Query: 117 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 293
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 294 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVXGIAKIM 464
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IM
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIM 117
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 180 bits (437), Expect = 6e-46
Identities = 85/117 (72%), Positives = 102/117 (87%), Gaps = 1/117 (0%)
Frame = +3
Query: 117 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 293
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 294 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVXGIAKIM 464
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IM
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIM 117
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 27.5 bits (58), Expect = 4.7
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 174 GEVGATSSLAPKIGPLGLSPKKVG-DDIAKATSDWKGLKITVQLTVQNR 317
GE+ SSL P G P VG DDIA S W G+ + Q+T R
Sbjct: 570 GELVEESSLPPAAGDD--EPILVGPDDIAAVASVWSGIPVQ-QITADER 615
>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain; contains 2 predicted transmembrane domains
Length = 988
Score = 27.5 bits (58), Expect = 4.7
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 90 IKLN*VINKMPPKFD--PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKA 263
++ N + K+PP+ PN ++ N + GE+ +T + + L +S + I
Sbjct: 165 LEYNQLSGKIPPELGNLPNLKRLSNN--LSGEIPSTFAKLTTLTDLRISDNQFTGAIPDF 222
Query: 264 TSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 359
+WKGL+ +L +Q + +PSA L+
Sbjct: 223 IQNWKGLE---KLVIQ-ASGLVGPIPSAIGLL 250
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 174 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 272
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 171 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 203
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 174 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 272
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 165 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 197
>At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putative
/ CPA-FA synthase, putative similar to cyclopropane
synthase [Sterculia foetida] GI:21069167; contains Pfam
profile PF02353: Cyclopropane-fatty-acyl-phospholipid
synthase
Length = 867
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 416 VFDIFLLFTVT-GRLLKGSDDKGCCRGNNSYLGLSVLNCQLHSDLETLPVTCGLGNVITH 240
+F +FL T+T + SDD+ + L + ++ D E L + CG G +
Sbjct: 586 LFGLFLDDTMTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLEIGCGWGTLAIE 645
Query: 239 LFRR 228
+ RR
Sbjct: 646 VVRR 649
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 460 IFAMPXTSSREMLPLCLIFFCFL 392
IF + T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At1g04650.1 68414.m00462 hypothetical protein
Length = 936
Score = 26.6 bits (56), Expect = 8.3
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +3
Query: 57 NSSIWI*RYYSIKLN*VINKMPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLG-LSP 233
+S++ + + YS +N +++M + ++ VG V + + LG L+
Sbjct: 141 DSTVRLCKEYSQTVNREVSEMKTSGHVGKARMEEGNAVGNLVSMITLGVKSLSELGMLAA 200
Query: 234 KKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAV 335
+ G+ +A + WKG+ +QL Q +++ V
Sbjct: 201 RDGGNLVAILNTSWKGVITLLQLDKQTLVSKVDV 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,284,608
Number of Sequences: 28952
Number of extensions: 205250
Number of successful extensions: 541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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