Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_F11
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55360.1 68416.m06148 3-oxo-5-alpha-steroid 4-dehydrogenase f... 128 2e-30
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 36 0.024
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 36 0.024
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 33 0.13
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 33 0.17
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 33 0.17
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 32 0.39
At5g16010.1 68418.m01872 3-oxo-5-alpha-steroid 4-dehydrogenase f... 31 0.89
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf... 30 1.2
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 30 1.2
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 29 2.1
At5g36740.1 68418.m04402 PHD finger family protein 29 3.6
At5g36670.1 68418.m04388 PHD finger family protein 29 3.6
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 29 3.6
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative... 29 3.6
At1g14350.1 68414.m01701 myb family transcription factor (MYB124... 29 3.6
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con... 28 4.8
At3g18200.1 68416.m02315 nodulin MtN21 family protein similar to... 28 6.3
At2g20142.1 68415.m02355 expressed protein 28 6.3
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH... 27 8.3
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH... 27 8.3
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 27 8.3
>At3g55360.1 68416.m06148 3-oxo-5-alpha-steroid 4-dehydrogenase
family protein / steroid 5-alpha-reductase family
protein similar to synaptic glycoprotein SC2 spliced
variant from Homo sapiens [EMBL:AF038958], SC2 from
Rattus sp. [gi:256994]; contains Pfam
3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
Length = 310
Score = 128 bits (310), Expect = 2e-30
Identities = 71/168 (42%), Positives = 93/168 (55%), Gaps = 11/168 (6%)
Frame = +3
Query: 156 SSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQ----DGSK----LF 311
+++ +++E + KK YP RQ L L + LNS DG+ +
Sbjct: 24 ATVADLQEAFHKRAKK-FYPSRQRLTLPVTPGSKDKPVVLNSKKSLKEYCDGNNNSLTVV 82
Query: 312 LKDLGPQVSWRNVFLAEYAGPLFVYLWVYQRP---WILYGTQTSSPEQVATVAAICWSAH 482
KDLG QVS+R +F EY GPL +Y Y P ++ YG + V T A W H
Sbjct: 83 FKDLGAQVSYRTLFFFEYLGPLLIYPVFYYFPVYKFLGYG-EDCVIHPVQTYAMYYWCFH 141
Query: 483 YAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFALYVAYHVNHPLYT 626
Y KR+ ET F+HRFSH T P+ N+FRNCAYYW F Y+AY+VNHPLYT
Sbjct: 142 YFKRILETFFVHRFSHATSPIGNVFRNCAYYWSFGAYIAYYVNHPLYT 189
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 35.9 bits (79), Expect = 0.024
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +3
Query: 138 IHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 314
+ V +I NVKEKIQ VK+ + PD+Q L G+ L+D TL +I S L+L
Sbjct: 566 LEVESSDTIANVKEKIQ--VKEGIKPDQQMLIF--FGQQLEDGVTLGDYDIHKKSTLYL 620
Score = 30.7 bits (66), Expect = 0.89
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 138 IHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 314
+ V +I+NVK KIQ ++ L PD Q L + +D TL I++ S L L
Sbjct: 174 LKVESSDTIENVKAKIQD--REGLRPDHQRLIFHGEELFTEDNRTLADYGIRNRSTLCL 230
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +3
Query: 135 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 314
K+HV E S+ +++ K + + + + +A+K+ KGK L DE +L + N+Q S + L
Sbjct: 674 KLHVGIEESVSSLRAKASRKLD---FKETEAVKMFYKGKELDDEKSLAAQNVQPNSLVHL 730
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +3
Query: 138 IHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 314
+ V +I+N+K KIQ K+ + D+Q +L KGK L+D TL NIQ+ S L L
Sbjct: 100 LEVENCDTIENIKAKIQD--KQGIPVDQQ--RLIFKGKQLEDGLTLADYNIQNDSILHL 154
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 135 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGS 302
+I V E S+ +VK+ I+ +YP + + + +GK LKDE T+ + + S
Sbjct: 14 EIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIH-QGKVLKDETTIEENKVAENS 68
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 135 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGS 302
+I V E S+ +VK+ I+ +YP + + + +GK LKDE T+ + + S
Sbjct: 14 EIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIH-QGKVLKDETTIEENKVAENS 68
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 31.9 bits (69), Expect = 0.39
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +3
Query: 135 KIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGS 302
+I V + +VK I+ +VK + YP + + + +GK LKDE TL N+ + S
Sbjct: 14 EIEVKPADKVSDVKTAIE-TVKGAEYPAAKQMLIH-QGKVLKDETTLEENNVVENS 67
>At5g16010.1 68418.m01872 3-oxo-5-alpha-steroid 4-dehydrogenase
family protein / steroid 5-alpha-reductase family
protein similar to steroid 5alpha-reductase - Rattus
norvegicus, PIR:A34239 [SP|24008]; contains Pfam
3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
Length = 268
Score = 30.7 bits (66), Expect = 0.89
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 480 HYAKRLFETLFIHRFSHG 533
H+ KR+FE LFIH++S G
Sbjct: 104 HFFKRVFEVLFIHKYSGG 121
>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
PF03637: Mob1/phocein family; contains Pfam F00560:
Leucine Rich Repeats; contains TIGRFAMS profile
TIGR01612: reticulocyte binding protein; hypothetical
protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
Length = 1405
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 162 IKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQD 296
++++KEKI++ + K D L L+ +G +ED + LN+QD
Sbjct: 99 LESLKEKIKEEMIKHK-KDNLLLILDDEGSMTTEEDVMQELNLQD 142
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 105 LSVSSAKPLGKIHVTG-ESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNS 281
+ +S+ G + G E S+ ++K K + + + + +A+K+ GK L+DE +L
Sbjct: 502 IKLSNLGGKGSLLTVGREESVSSLKAKASRKLD---FKETEAVKMFYMGKELEDEKSLAE 558
Query: 282 LNIQDGSKLFL 314
N+Q S + L
Sbjct: 559 QNVQPNSLVHL 569
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 108 SVSSAKPLGKIHVTGESSIKNVKEKIQQSVKK--SLYPDRQALKLEAKGKTLKDEDTLNS 281
+V S GK+ VTG ++EK+++ KK L + + E + K DED S
Sbjct: 55 TVKSESATGKLTVTGALDPVKLREKLEEKTKKKVDLVSPQPKKEKEKENKNKNDEDKKKS 114
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 144 VTGESSIKNVKEKIQQSVKKSLYPD 218
V+G SS+ VKE+++Q KSL P+
Sbjct: 90 VSGGSSVDEVKEEVKQECVKSLVPE 114
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 144 VTGESSIKNVKEKIQQSVKKSLYPD 218
V+G SS+ VKE+++Q KSL P+
Sbjct: 90 VSGGSSVDEVKEEVKQECVKSLVPE 114
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +3
Query: 138 IHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL 314
+ V+ + ++K++K ++Q ++ P Q KL KGK L + TL ++ G+KL L
Sbjct: 549 LSVSPDCTVKDLKSQLQPIT--NVLPRGQ--KLIFKGKVLVETSTLKQSDVGSGAKLML 603
>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
(UBP6) similar to GI:11993465
Length = 482
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 213 PDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFLKDLGPQV 335
P+RQ K+ KG LKD+ ++ ++DG KL + ++
Sbjct: 39 PERQ--KIMVKGGLLKDDGDWAAIGVKDGQKLMMMGTADEI 77
>At1g14350.1 68414.m01701 myb family transcription factor (MYB124)
contains PFAM profile: PF00249 myb-like DNA binding
domain
Length = 436
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 120 AKPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKG-KTLKDEDTLNSLNIQD 296
AK L + H+ + I N + + V + + L A G +L++++ +++N D
Sbjct: 161 AKKLKRSHILDLTEISNYG-RAEACVNQQIRSPFSVLARNATGIDSLEEQNQTSNVNESD 219
Query: 297 GSKLFLKDLGPQVS 338
G +FLK P+V+
Sbjct: 220 GEGMFLKKDDPKVT 233
>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase BGQ60 precursor GB:A57512
[Hordeum vulgare]; similar to beta-mannosidase enzyme
(GI:17226270) [Lycopersicon esculentum]
Length = 512
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Frame = +3
Query: 315 KDLGPQVSWRNVF----LAEYAGPLFVYLWVYQRPWILY 419
KDLG Q W F L + GP W+Y PW +Y
Sbjct: 362 KDLGYQQDWNVEFGFAKLGKPIGPRAYSSWLYNVPWGMY 400
>At3g18200.1 68416.m02315 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 360
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 333 VSWRNVFLAEYAGPLFVYLWVYQRPWILY 419
VSW +F YAG + L VY + W +Y
Sbjct: 244 VSWEELFTILYAGIIASGLVVYLQTWCIY 272
>At2g20142.1 68415.m02355 expressed protein
Length = 159
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Frame = +3
Query: 381 VYLWVYQRPWILYGTQTSS-----PEQVATVAAIC 470
V+ W + PW Y TQ S+ PE + V A+C
Sbjct: 82 VWKWTWPIPWFHYQTQRSNRFGSFPEMLGLVCALC 116
>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 742
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 126 PLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDED 269
P+G + ++ ESS K IQQ + PD A + E T KD D
Sbjct: 695 PVGSLLISPESSTKASVLVIQQYNGTGIAPDLGAAETEVLTSTDKDSD 742
>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 810
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 126 PLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDED 269
P+G + ++ ESS K IQQ + PD A + E T KD D
Sbjct: 763 PVGSLLISPESSTKASVLVIQQYNGTGIAPDLGAAETEVLTSTDKDSD 810
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 153 ESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQ 293
+S++++ KE + QS S P Q +L KG+ LKD+ TL S +Q
Sbjct: 37 DSTVESFKELVAQS---SDVPANQQ-RLIYKGRILKDDQTLLSYGLQ 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,823,510
Number of Sequences: 28952
Number of extensions: 289538
Number of successful extensions: 789
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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