Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_F10
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 158 6e-40
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 81 1e-16
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 79 5e-16
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 79 7e-16
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 77 2e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 77 3e-15
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 76 5e-15
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 75 1e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 67 2e-12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 66 5e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 62 7e-11
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 62 9e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 61 2e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 3e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 60 4e-10
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 58 1e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 57 2e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 56 6e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 56 6e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 44 1e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 40 4e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 39 5e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 38 0.001
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.58
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 27 1.8
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 26 5.4
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 5.4
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 158 bits (384), Expect = 6e-40
Identities = 77/111 (69%), Positives = 89/111 (80%)
Frame = +3
Query: 315 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 494
D +K ++K P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQE SI
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESI 75
Query: 495 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELAL 647
PIALSG+D+LARAKNGTGKT A+ IP LE+VD KK IQ LI+VPTRELAL
Sbjct: 76 PIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELAL 126
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 81.4 bits (192), Expect = 1e-16
Identities = 40/80 (50%), Positives = 56/80 (70%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F++ LK ELL GI+ G+E+PS IQ+ +I L +DVLA+A++GTGKT + I VL++
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 585 VDPKKDTIQALIVVPTRELA 644
+D QALI+ PTRELA
Sbjct: 81 IDTSLKQCQALILAPTRELA 100
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 79.0 bits (186), Expect = 5e-16
Identities = 38/83 (45%), Positives = 55/83 (66%)
Frame = +3
Query: 399 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 578
+ FEE LK +LL GI+ G+E PS +Q +I G+DV+A+A++GTGKT + I +L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 579 EQVDPKKDTIQALIVVPTRELAL 647
+ +D QALI+ PTRELA+
Sbjct: 81 QSIDLSVRDTQALILSPTRELAV 103
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 78.6 bits (185), Expect = 7e-16
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Frame = +3
Query: 369 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTG 548
K + T + F+ L R +L G+ G+E P+ IQ+ +IP+AL GKD++ A G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 549 KTGAYCIPVLEQV--DPKK-DTIQALIVVPTRELAL 647
KT A+ +P+LE++ PKK T + LI+ PTRELA+
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAM 344
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 77.4 bits (182), Expect = 2e-15
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Frame = +3
Query: 237 TENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEF 416
T+N+ +VG ++S +D G K+ +RR K N F+
Sbjct: 25 TDNQKDKHENVGENVSD---------EDDGNYIASKLLESNRRTKGKKGNGKASN-FQSM 74
Query: 417 CLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP- 593
L + LL IF+KG++ P+PIQ +IP+ L G+DV+ A+ G+GKT A+ IP++E +
Sbjct: 75 GLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKST 134
Query: 594 -KKDTIQALIVVPTRELAL 647
+ALI+ P RELAL
Sbjct: 135 LANSNTRALILSPNRELAL 153
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 76.6 bits (180), Expect = 3e-15
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 6/86 (6%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE- 581
F +F L L I + +EKP+ +Q +IP+AL GKD++A+A+ G+GKT AY IP+LE
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 582 -----QVDPKKDTIQALIVVPTRELA 644
Q+D + I AL++VPTRELA
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELA 101
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 75.8 bits (178), Expect = 5e-15
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F +F LK ELL I + G+E PS +Q+ IP ++ G DVL +AK+G GKT + + L+Q
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 585 VDPKKDTIQALIVVPTRELA 644
++P + L++ TRELA
Sbjct: 113 IEPVDGEVSVLVLCHTRELA 132
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 74.5 bits (175), Expect = 1e-14
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 9/152 (5%)
Frame = +3
Query: 216 DKFGKMMTENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDR-RIKTSDV-TD 389
D+ G +TEN + S + + T E + +S L IP K+ R+K +D+ D
Sbjct: 49 DRLGPKITENVDAKSEQ--DKATNTIAEDANTKQSENDESNL-IPNKNEVRVKLADLQAD 105
Query: 390 TRG-----NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG--KDVLARAKNGTG 548
FEE LK ELL GI+ ++KPS IQE ++P+ LS ++++ ++++GTG
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTG 165
Query: 549 KTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 644
KT A+ + +L +VD QA+ + P+RELA
Sbjct: 166 KTAAFALTMLSRVDASVPKPQAICLAPSRELA 197
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 66.9 bits (156), Expect = 2e-12
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +3
Query: 414 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP 593
F L E+L + + G+ KP PIQ IP A G D++ +A G+GKT A+ IP+LE
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR 186
Query: 594 KKDT--IQALIVVPTRELA 644
D +QAL+V PTRELA
Sbjct: 187 NVDAKYVQALVVAPTRELA 205
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 65.7 bits (153), Expect = 5e-12
Identities = 32/90 (35%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Frame = +3
Query: 387 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKT 554
D++ NE F+E + EL + G++ P+PIQ+ +IP+ L+ +DV+ A+ G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 555 GAYCIPVLEQVDPKKDTIQALIVVPTRELA 644
A+ +PV++++ A+++ PTRELA
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELA 127
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 62.1 bits (144), Expect = 7e-11
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Frame = +3
Query: 354 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 533
K + S +D +F + L + I E G+E + IQ+ SIP L+G+DVL A
Sbjct: 76 KSVNLNASSTSDIE--KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAA 133
Query: 534 KNGTGKTGAYCIPVLEQV-----DPKKDTIQALIVVPTRELAL 647
K G+GKT A+ IP +E + P+ T +I+ PTRELAL
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKPRNGT-GVIIISPTRELAL 175
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 61.7 bits (143), Expect = 9e-11
Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = +3
Query: 402 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 581
+F+E + +L G+ K +++P+PIQ A+ P L+G+DV+ A+ G+GKT A+ IP L+
Sbjct: 168 QFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
Query: 582 QVD---PKKDTIQALIVVPTRELAL 647
++ K + L+V PTRELA+
Sbjct: 226 YLNGLSDNKSVPRVLVVSPTRELAI 250
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 60.9 bits (141), Expect = 2e-10
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
FEE +L + + G+E P+PIQ+ + P+A+SG+D++ + G+GKT +YC+P +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 585 VDPKK-----DTIQALIVVPTRELAL 647
++ + D L++ PTRELA+
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAV 209
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.1 bits (139), Expect = 3e-10
Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 18/128 (14%)
Frame = +3
Query: 315 DDVGWKSKL--KIPPKDRRIKTSDVT-DTRGNE-------FEEFCLKRELLMGIFEKGWE 464
DDV W+ K + P+D RI D +G++ +EE L E+L + + ++
Sbjct: 211 DDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYK 270
Query: 465 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPV---LEQVDPKKDTIQ-----ALI 620
+PS IQ A+IP+ L KD++ A+ G+GKT A+ IP+ + ++ P ++ A++
Sbjct: 271 EPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVV 330
Query: 621 VVPTRELA 644
+ PTRELA
Sbjct: 331 LAPTRELA 338
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 59.7 bits (138), Expect = 4e-10
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F+ + + L + +G++K +P+Q +IP+ L KD++ A G+GKT AY +P ++
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 585 V---DPKKDTIQALIVVPTRELA 644
V D + + ALIV PTRELA
Sbjct: 63 VTRRDTDETGLGALIVAPTRELA 85
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 58.0 bits (134), Expect = 1e-09
Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 4/61 (6%)
Frame = +3
Query: 477 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK----DTIQALIVVPTRELA 644
IQ+ IP AL G+D+L AK G+GKT A+ +P++E + KK D + AL++ PTRELA
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 645 L 647
+
Sbjct: 125 I 125
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = +3
Query: 399 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 578
NEF L LL I G+ +P+P+Q+ SIPI SG+D++A A+ G+GKT + P+L
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 55.6 bits (128), Expect = 6e-09
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Frame = +3
Query: 420 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK 599
L + + I G+EKP+ IQ +IP SG+DV+ AK G+GKT A+ +P+ + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 600 -----DTIQALIVVPTRELAL 647
+ A+I+ PTRELA+
Sbjct: 485 PLKTGEGPIAIIMTPTRELAV 505
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 55.6 bits (128), Expect = 6e-09
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = +3
Query: 465 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 644
+P+ IQE I L G++ + AK G+GKT A+ +P++E+ I ALI+ PTRELA
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELA 88
Query: 645 L 647
+
Sbjct: 89 I 89
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 44.4 bits (100), Expect = 1e-05
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +3
Query: 477 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVD-PKKDTIQALIVVPTREL 641
IQ +IP S +D+LA A G+GKT AY P+L+++ +A+IV PTREL
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTREL 127
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 39.5 bits (88), Expect = 4e-04
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Frame = +3
Query: 468 PSPIQEASIPIALS--GKDVLARAKNGTGKTGAYCIPVLEQVD--PKK-----DTIQALI 620
P+ IQ +P L+ KD A+ G+GKT AY +P+++++ PK I A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 621 VVPTREL 641
+ PTREL
Sbjct: 222 MAPTREL 228
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 39.1 bits (87), Expect = 5e-04
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Frame = +3
Query: 456 GWEKPSPIQEASI-PIALSGKDVLARAKNGTGKTGAYCIPVLEQV---DPKKDT--IQAL 617
G+EK +P+Q+ + + + ++ + +AK GTGKT A+ + + V P+ ++ I ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 618 IVVPTRELAL 647
I+ PTRELAL
Sbjct: 117 ILSPTRELAL 126
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 495 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK-DTIQALIVVPTRELAL 647
P+ G DV A G+GKT +Y IP+++ + + ++ +++VPTREL +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTV 219
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.1 bits (62), Expect = 0.58
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 420 LKRELLMGIF-EKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPK 596
L +EL+ ++ + EK Q +I +G V+ +GK+ Y IP+L+ + +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 597 KDTIQALIVVPTRELA 644
+ A V PT+ LA
Sbjct: 354 DNQSTAFFVFPTKSLA 369
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 12 NSCDVVVEYRVSSPFLNFYLA 74
N ++VEY++ S FL FYLA
Sbjct: 231 NDVPLLVEYKMESGFLRFYLA 251
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +3
Query: 459 WEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYC-----IPVLEQVDPKKDTIQALIV 623
W P P +A+ P+A + +++ + + + YC IPV K D I+ +
Sbjct: 572 WNAPIPYPDANCPMAPTYRNLTSEQEEMYEEVLKYCLELKEIPVASNSSKKTDLIELERL 631
Query: 624 VPTRELAL 647
TRE L
Sbjct: 632 WLTRECIL 639
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 246 RISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDT 392
R+ SS + ++ + E+DK+ D G +KLK PK ++T D+ T
Sbjct: 1315 RVDSSFYTSENLRR---ELDKAFDRSGTAAKLK-HPKKTVVETLDILTT 1359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,900
Number of Sequences: 5004
Number of extensions: 42767
Number of successful extensions: 172
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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