Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_F10
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 179 2e-45
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 179 2e-45
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 81 8e-16
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 78 7e-15
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 73 2e-13
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 69 3e-12
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 8e-12
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 67 1e-11
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 60 2e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 58 6e-09
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 56 2e-08
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 56 3e-08
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 52 4e-07
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 50 2e-06
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 48 7e-06
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 41 0.001
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 40 0.001
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.066
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 35 0.066
SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 30 1.4
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 28 5.7
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06) 28 7.6
SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10) 28 7.6
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 179 bits (435), Expect = 2e-45
Identities = 79/107 (73%), Positives = 96/107 (89%)
Frame = +3
Query: 327 WKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAL 506
WK+ LK+PPKD R KTSDVT T+GNEFE++CLKRELLMGIFEKG++KPSPIQE SIP+AL
Sbjct: 23 WKANLKLPPKDNRFKTSDVTATKGNEFEDYCLKRELLMGIFEKGFDKPSPIQEESIPVAL 82
Query: 507 SGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELAL 647
+G+D+LARAKNGTGKT AY +P+LE+ D K+ IQAL++VPTRELAL
Sbjct: 83 AGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELAL 129
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 179 bits (435), Expect = 2e-45
Identities = 79/107 (73%), Positives = 96/107 (89%)
Frame = +3
Query: 327 WKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAL 506
WK+ LK+PPKD R KTSDVT T+GNEFE++CLKRELLMGIFEKG++KPSPIQE SIP+AL
Sbjct: 23 WKANLKLPPKDNRFKTSDVTATKGNEFEDYCLKRELLMGIFEKGFDKPSPIQEESIPVAL 82
Query: 507 SGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELAL 647
+G+D+LARAKNGTGKT AY +P+LE+ D K+ IQAL++VPTRELAL
Sbjct: 83 AGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELAL 129
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/93 (43%), Positives = 59/93 (63%)
Frame = +3
Query: 369 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTG 548
+T+DV +F L LL G+ E G+EKPSPIQ +IP+ G D++A+AK+GTG
Sbjct: 3 RTTDVLIEEQIDFHSLLLSPTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTG 62
Query: 549 KTGAYCIPVLEQVDPKKDTIQALIVVPTRELAL 647
KT + + LE V + + IQ +I+ PTRE+A+
Sbjct: 63 KTCVFSVIALENVITESNCIQIIILTPTREIAV 95
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 77.8 bits (183), Expect = 7e-15
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Frame = +3
Query: 354 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 533
KD + ++ + +F +F + + L G+ + G+ P+ IQ+ IP+ALSG+DVL A
Sbjct: 35 KDLEDRCKEIGSSEVEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAA 94
Query: 534 KNGTGKTGAYCIPVLEQVDPKK----DTIQALIVVPTRELA 644
K G+GKT A+ IP++E + +K D + AL++ PTRELA
Sbjct: 95 KTGSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELA 135
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F +F LK ELL I + G+E PS +Q IP A+ G D++ +AK+G GKT + + L+Q
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQ 108
Query: 585 VDPKKDTIQALIVVPTRELA 644
++P + L++ TRELA
Sbjct: 109 LEPVDGQVSVLVMCHTRELA 128
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F +F LK ELL I + G+E PS +Q IP A+ G D++ +AK+G GKT + + L+Q
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQ 108
Query: 585 VDPKKDTIQALIVVPTRELA 644
++P + L++ TRELA
Sbjct: 109 LEPVDGQVSVLVMCHTRELA 128
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Frame = +3
Query: 450 EKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV---DPKKDTIQALI 620
E G+ P+PIQ ++IP+AL GKDV A A GTGKT A+ +P+LE++ + I+ L+
Sbjct: 27 ELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLV 86
Query: 621 VVPTRELAL 647
+ PTRELA+
Sbjct: 87 ITPTRELAI 95
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 68.5 bits (160), Expect = 4e-12
Identities = 32/64 (50%), Positives = 47/64 (73%)
Frame = +3
Query: 453 KGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPT 632
+G+EKPS IQ+ +I L G+DV+A+A++GTGKT + I VL+ +D + QAL++ PT
Sbjct: 15 EGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPT 74
Query: 633 RELA 644
RELA
Sbjct: 75 RELA 78
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 67.7 bits (158), Expect = 8e-12
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F E +L+ I G+ +P+P+Q+A++PI ++G+D++A A+ G+GKT AY +PVL
Sbjct: 481 FNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTS 540
Query: 585 V------DPKKDTIQALIVVPTRELA 644
+ P + + AL V PTRELA
Sbjct: 541 LIKQGLNAPPRSPL-ALCVAPTRELA 565
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Frame = +3
Query: 330 KSKLKIPPKDRRIKTSDVTDT--RGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIA 503
+ KL + + + SD + FEE L L G+++ G+ KPS IQE ++P+
Sbjct: 78 RDKLVVTKHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPML 137
Query: 504 LSGKDV--LARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 644
L+ V +A++++GTGKT A+ + +L +VD K Q + + PT ELA
Sbjct: 138 LADPPVNMIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPTYELA 186
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 9/91 (9%)
Frame = +3
Query: 399 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 578
N FEE L L + + ++KP+P+Q+ SIPI ++G+DV+A A+ G+GKT A+ +PV+
Sbjct: 711 NSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKTAAFLLPVM 770
Query: 579 EQV---------DPKKDTIQALIVVPTRELA 644
+ + T QA+ + PTRELA
Sbjct: 771 TSMMNAGLTSSSFSETQTPQAMCIAPTRELA 801
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 59.7 bits (138), Expect = 2e-09
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Frame = +3
Query: 303 DKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQ 482
D+ +D++ WK+ + I +D F + L EL + +K ++ P+PIQ
Sbjct: 48 DEVVDEIRWKNGIHIEGED--------CPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQ 99
Query: 483 EASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK-----DTIQALIVVPTREL 641
S+ +SG+D++ A+ G+GKT AY +P+ + K DT ALI+ PTREL
Sbjct: 100 MQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTREL 157
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 58.0 bits (134), Expect = 6e-09
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 20/146 (13%)
Frame = +3
Query: 267 VGNSISQTKGEVDK-SIDDVGWKSKL--KIPPKDRRIKTSDVT-DTRGN-------EFEE 413
+ N + + K + K + DD W K ++ +D RI D T+G +++E
Sbjct: 46 IRNRLKKEKDKERKVAFDDRHWTKKNLEEMTERDWRIFREDFNISTKGGRIPFPIRKWKE 105
Query: 414 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPV------ 575
+ +L + + G++ P+PIQ +IPI L +D++ A+ G+GKT A+ IP+
Sbjct: 106 AQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMG 165
Query: 576 LEQVDPKKDTIQ---ALIVVPTRELA 644
L +++ D Q ALI+ PTRELA
Sbjct: 166 LPKIERDNDADQGPYALILAPTRELA 191
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 56.8 bits (131), Expect = 1e-08
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 28/108 (25%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIP----------------------IALSGKD 518
F++ LK LL GI+ G+EKPS IQ+ +I LS +D
Sbjct: 65 FDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQEFSPSHVCYNQLNLTKNHYVLSARD 124
Query: 519 VLARAKNGTGKTGAYCIPVLEQVDPKK------DTIQALIVVPTRELA 644
V+A+A++GTGKT + I +L+++D D QAL++ PTRELA
Sbjct: 125 VIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELA 172
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = +3
Query: 420 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK 599
L + L+ G +KP+ IQ +P L G+D + AK G+GKT A+ +P+L+++
Sbjct: 14 LNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDP 73
Query: 600 DTIQALIVVPTRELA 644
I A+++ PTRELA
Sbjct: 74 YGIFAVVLTPTRELA 88
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Frame = +3
Query: 489 SIPIALSGKDVLARAKNGTGKTGAYCIPVLE--QVDPKKDTIQALIVVPTRELAL 647
++P+ + GKDV+A A+ G+GKT A+ IP+ E Q K I+ALI+ PTRELAL
Sbjct: 311 TLPLVMDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELAL 365
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +3
Query: 402 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 581
EF F + +L+ + + G KP PIQE ++P S K +L +++ GTGK+ + +P ++
Sbjct: 161 EFSNFGVHPKLVEKLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSVQ 220
Query: 582 QVDPKKDTIQALIVVPTRELA 644
DP + +IVVPTRELA
Sbjct: 221 --DPGRG-YGTIIVVPTRELA 238
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/62 (38%), Positives = 42/62 (67%)
Frame = +3
Query: 402 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 581
+FE+ L LL + G++KP+P+Q+ +IPI +D++A A+ G+GKT A+ IP+L
Sbjct: 876 QFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILS 935
Query: 582 QV 587
++
Sbjct: 936 RI 937
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F F +++ I + + +P+ IQ ++PIALSG+D++ AK G+GKT A+ P L
Sbjct: 519 FAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVH 578
Query: 585 V--DPK---KDTIQALIVVPTREL 641
+ P+ D LI PTREL
Sbjct: 579 IMDQPELQVGDGPIVLICAPTREL 602
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +3
Query: 399 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKT 554
N FEE L L + + ++KP+P+Q+ SIPI ++G+DV+A A+ G+GKT
Sbjct: 134 NSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKT 185
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +3
Query: 402 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALS-GKDVLARAKNGTGKTGAYCIPVL 578
E+E + ++L + ++G+ KP+PIQ SIP AL +D++ A+ G+GKT A+ IP++
Sbjct: 131 EWEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPII 190
Query: 579 EQVDPKK 599
+ ++ K
Sbjct: 191 QHIEAYK 197
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 51.2 bits (117), Expect = 7e-07
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Frame = +3
Query: 420 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE-----Q 584
+ + L GI + G+ + IQ SI L G+D+L AK G+GKT A+ +PV+E Q
Sbjct: 579 VSEKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQ 638
Query: 585 VDPKKDTIQALIVVPTRELAL 647
+ T +I+ PTREL+L
Sbjct: 639 FKTRNGT-GVIIISPTRELSL 658
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Frame = +3
Query: 393 RGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP 572
R +F +F + ++ + + ++G PIQ ++ G+DV+ +A+ GTGKT ++ +P
Sbjct: 71 REGDFSKFRISQKTIDNLEDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALP 130
Query: 573 VLEQVDPKK------DTIQALIVVPTRELA 644
++E++ K + L++ PTRELA
Sbjct: 131 LVEKLQDGKLSQKRGRAPKVLVMAPTRELA 160
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +3
Query: 513 KDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 644
KDV+ A+ G+GKTGA+ +P+L+ + + ALI+ PTRELA
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELA 45
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 40.7 bits (91), Expect = 0.001
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Frame = +3
Query: 249 ISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKR 428
++SSN ++S KGE + +I+ VG ++ P D + R F L+
Sbjct: 337 MASSNLPEATVS--KGEKEVTIEAVG-QNPAFTPDSDMAFRQ------RVYSFAGLGLRD 387
Query: 429 ELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV--DPKKD 602
++L + +P+ IQ +IP + V+ A+ G+GKT AY P++ ++ D ++
Sbjct: 388 DVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPLVHRLREDEERH 447
Query: 603 TI-------QALIVVPTRELA 644
I +A IVVP RELA
Sbjct: 448 GILARLKRPRACIVVPARELA 468
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 402 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGK 551
EF L + G+ P+PIQ +P+ LSG+DV+ A G+GK
Sbjct: 197 EFFHCSFNESLSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGK 246
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 34.7 bits (76), Expect = 0.066
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +3
Query: 450 EKGWEKPSPIQEASIPIALSGKDVLA 527
+ +EKP+PIQ +IP+ +SG+D++A
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIA 147
Score = 30.7 bits (66), Expect = 1.1
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Frame = +3
Query: 291 KGEVD--KSIDDVGWKSKLKIP-PKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGW 461
+G++D + + V K+ + P KD ++ ++ E +EF L E I +G
Sbjct: 42 EGDIDAMEELQPVDHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLE---NIHVRGK 98
Query: 462 EKPSPIQE-ASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRE 638
P P++ A + L DVL KN K + + +D I A+++ PTRE
Sbjct: 99 NAPKPVKTWAQTGVQLKILDVLK--KNSYEKPTPIQAQAIPVIMSGRDMI-AIVMTPTRE 155
Query: 639 LAL 647
LA+
Sbjct: 156 LAI 158
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 468 PSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 587
P+ +Q+ P L G+DV A G+GK AY +P++ Q+
Sbjct: 210 PTSLQKHMWPSLLRGRDVAGVAIEGSGKRLAYLLPIIHQI 249
>SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 399 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIA-LSGKDVLARAK 536
+E+E + ++L + ++G+ KP+PIQ SIP A L +D++ A+
Sbjct: 72 SEWEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAE 118
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 474 PIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 578
P+Q +I L+ KD L G GKT Y IP L
Sbjct: 142 PMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPAL 176
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +3
Query: 444 IFEKGWEKPSPIQEASIPIALSG-KDVLARAKNGTGKTGAYCIPV----LEQVDPKKDTI 608
I+ KG + P P++ S I G D + G T I + L PKK
Sbjct: 147 IYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPLMAHGPKKSGF 206
Query: 609 QALIVVPTRELA 644
+A++V PTRELA
Sbjct: 207 RAVVVSPTRELA 218
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -3
Query: 556 PVLPVPFLALASTSFPLRAIGIEAS*IGDGFSHPFS-KI-PINNSRFKQNSSNSLP 395
P+LP L ++ +PLR+ + G ++ + +I P NSR QNS NSLP
Sbjct: 480 PILPTKRLLAVNSQYPLRSQAPQKQ-PGYFYNLDYQGRINPATNSRQTQNSLNSLP 534
>SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 505 RAIGIEAS*IGDGFSHPFSKIPINNSRFKQNS 410
RA+G+ ++ +G G S PF+ I +NN R N+
Sbjct: 476 RAVGLASADLG-GASDPFAVIEVNNQRLVTNT 506
>SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)
Length = 1176
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 354 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKD 518
KD+ T+D +DT G +E C+ + + G K + AS +A GK+
Sbjct: 881 KDKDDNTTDTSDTTGGGNKEACIGADSVDSAECDGAGKGEGLDAASKEVACEGKE 935
>SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)
Length = 673
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 240 ENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTR 395
E R+ SSN + ++ T+GE++ I + + + PK R ++ T R
Sbjct: 309 EPRVPSSNAESSPVTTTRGEMETKIKPMSAPGRCRGAPKSLRDASNSPTRNR 360
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,164,208
Number of Sequences: 59808
Number of extensions: 282401
Number of successful extensions: 697
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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