Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_F08
(440 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa... 39 4e-04
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 30 0.18
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.55
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 27 0.97
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 27 1.7
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 26 2.2
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 25 5.2
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 5.2
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 25 5.2
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 25 5.2
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 24 9.0
>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 38.7 bits (86), Expect = 4e-04
Identities = 16/43 (37%), Positives = 30/43 (69%)
Frame = +3
Query: 312 IEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLKRXVAKKL 440
IEE+ K +E + V +++LD+ +L P+KP WDL+R + +++
Sbjct: 72 IEEKTKRKIEE-QSSVPVEELDLVTLRPKKPTWDLERDLKERM 113
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 29.9 bits (64), Expect = 0.18
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -2
Query: 406 SGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLS 287
S FL + ++ S S ++ LP S + TS+ +TV S+SLS
Sbjct: 226 SSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLS 265
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 0.55
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 249 SYKPQD-EALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITS 386
SY+PQ+ +E N+ E +++E+E+ LLE G++ L ++ S
Sbjct: 15 SYEPQEINPGEEIPENEREISIVEDEIVCLLEKGEDDWYLVKRNVNS 61
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 27.5 bits (58), Expect = 0.97
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 199 QIILQMKQ*HCPNQNLEVTSLKMKHYKNPNL 291
++ +++ H +QN EVT +K + YKN L
Sbjct: 467 ELTAKLRAYHAASQNAEVTDVKKRGYKNYGL 497
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 249 SYKPQDEALQESKLNDAEPTVIEEEVKD 332
SYK D +++ESKL D E V ++ D
Sbjct: 56 SYKFDDHSIEESKLGDFERKVFNDKNDD 83
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 267 EALQESKLNDAEPTVIEEEVKDLLEAGK 350
E L+ S +ND E + +EE + L+ +GK
Sbjct: 166 EQLEHSDINDEETSDFDEEFEKLVASGK 193
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 234 KPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVL 365
K +SYK +++ ES + + + +E++++ E K+KV L
Sbjct: 232 KQHVKSYKQREKTRLESNGHVSPRDMDLDEIENVFEGNKDKVAL 275
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 237 PKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKE 353
P F+ Y Q LQE ++ AE E+ V D+LE+ E
Sbjct: 528 PTFKIYTQQ--LLQEKTVSKAEVDAQEKRVWDILESSFE 564
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 306 TVIEEEVKDLLEAGKEKVVLQDLDITSLAPRK 401
T+I +KDL G + + ++D+D PR+
Sbjct: 607 TMISRRIKDLTRRGIDNIYVKDIDRPWNVPRQ 638
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 383 CYVEILENHLFFTSLQQIFYFFFYHCWFCIIK 288
C ++ LF L++ FY++ HC I K
Sbjct: 681 CMDQLTSLKLFINILERYFYYYDQHCESIIAK 712
>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 24.6 bits (51), Expect = 6.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 439 SFLATXRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSS 317
SF T R+ +K + W TTFS+ + +F SS
Sbjct: 59 SFSTTLRILRDFIIAASKCEFEKIWSTTFSISFLSFNFKSS 99
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.2 bits (50), Expect = 9.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -2
Query: 430 ATXRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLSLDSCNA 269
++ R S S F+ + S T P+S+ S TSS + +A+L+L++ A
Sbjct: 230 SSSRPSSSSSFI-TTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNASKA 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,421,940
Number of Sequences: 5004
Number of extensions: 21048
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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