Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F08
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1504 + 30633063-30633070,30633260-30633391,30633766-306339...    44   5e-05
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    28   2.9  
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134...    28   3.8  
01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642...    27   6.7  
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242...    27   6.7  

>06_03_1504 +
           30633063-30633070,30633260-30633391,30633766-30633901,
           30633992-30634106,30634230-30634288
          Length = 149

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 24/71 (33%), Positives = 38/71 (53%)
 Frame = +3

Query: 228 LPKPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPD 407
           +P  KFR+Y P DE L+  K+        E+ +    E  + K V  +    ++AP+ P+
Sbjct: 49  MPAMKFRNYLPHDEQLRGGKVAPVSLPKFEDPIS--AETTEPKQV--ENPFGNIAPKNPN 104

Query: 408 WDLKRXVAKKL 440
           WDLKR V K++
Sbjct: 105 WDLKRDVQKRM 115


>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 123 SYRQILHCPLLPYLLRGVST 64
           SYR I+HC   P+ L+G ST
Sbjct: 237 SYRDIMHCNKKPFYLKGGST 256


>01_05_0724 -
           24612712-24612852,24612985-24613038,24613340-24613429,
           24613499-24613780,24613926-24614119,24614379-24614508,
           24614610-24614690,24614766-24614891,24615019-24615076,
           24615319-24615380,24615753-24615803,24615946-24616065,
           24616280-24616403,24616832-24616920,24617304-24617396,
           24617910-24618063,24618673-24619178
          Length = 784

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 231 PKPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDW 410
           P P      P+ E +  +   +    V EEE++DL+E G+  V+     + + A R  DW
Sbjct: 63  PPPPELPAAPEAEEVVGTAAAEGGGKVEEEELEDLVEKGRAWVLALAAAVVAAARRFFDW 122


>01_07_0160 -
           41563109-41563468,41563566-41563985,41564082-41564263,
           41564362-41564542,41565066-41565084,41565185-41565445,
           41566140-41566253,41566264-41566331,41566890-41567018,
           41567141-41567245,41567317-41567456,41567519-41567687,
           41567824-41567900,41568133-41568187,41568660-41568705,
           41568806-41568894,41568996-41569061,41569360-41569425,
           41569817-41569906,41570009-41570026
          Length = 884

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 72  HRGVGMVIMDSAESVGSLEEQA 137
           HRG+G +   SAESV S+ + +
Sbjct: 132 HRGIGFITFQSAESVDSIMQDS 153


>01_03_0260 -
           14323503-14323603,14323751-14323990,14324212-14324275,
           14324349-14324654,14324841-14325055,14325551-14325845,
           14325965-14326129,14326324-14327352,14333553-14333814,
           14334135-14334631,14338714-14340123
          Length = 1527

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 372 LDITSLAPRKPDWDLKRXVAKKL 440
           +D TS +PR+P WD  R VA  L
Sbjct: 369 VDFTSASPRRPLWDGVRLVAALL 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,093,178
Number of Sequences: 37544
Number of extensions: 135113
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)