Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F08
         (440 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020830-1|AAH20830.1|  166|Homo sapiens coiled-coil domain cont...    84   2e-16
AK096749-1|BAC04857.1|  166|Homo sapiens protein ( Homo sapiens ...    84   2e-16
AY424672-1|AAR06216.1|  123|Homo sapiens T-cell receptor beta ch...    29   9.4  

>BC020830-1|AAH20830.1|  166|Homo sapiens coiled-coil domain
           containing 12 protein.
          Length = 166

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 35/67 (52%), Positives = 53/67 (79%)
 Frame = +3

Query: 240 KFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLK 419
           + R+Y P+DE L++ ++  A+P  +EE+VK+ LEA K + V++++D+ +LAPRKPDWDLK
Sbjct: 58  RLRNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLK 117

Query: 420 RXVAKKL 440
           R VAKKL
Sbjct: 118 RDVAKKL 124


>AK096749-1|BAC04857.1|  166|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39430 fis, clone PROST2002489. ).
          Length = 166

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 35/67 (52%), Positives = 53/67 (79%)
 Frame = +3

Query: 240 KFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLK 419
           + R+Y P+DE L++ ++  A+P  +EE+VK+ LEA K + V++++D+ +LAPRKPDWDLK
Sbjct: 58  RLRNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPESVIEEVDLANLAPRKPDWDLK 117

Query: 420 RXVAKKL 440
           R VAKKL
Sbjct: 118 RDVAKKL 124


>AY424672-1|AAR06216.1|  123|Homo sapiens T-cell receptor beta chain
           variable region protein.
          Length = 123

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -2

Query: 433 LATXRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLSLDS 278
           L    LR +SGF+  K  +SR   T  +L  SN S   SSI + S  L+ +S
Sbjct: 1   LQNSALRYESGFVIDKFPISRPNLTFSTLTVSNMSPEDSSIYLCSVELARNS 52


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,291,094
Number of Sequences: 237096
Number of extensions: 770379
Number of successful extensions: 2344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2340
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)