Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F08
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05070.1 68416.m00550 expressed protein                             52   2e-07
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam...    31   0.46 
At3g66652.1 68416.m00776 fip1 motif-containing protein contains ...    27   4.2  
At3g16230.1 68416.m02048 expressed protein similar to ASC-1 comp...    27   5.6  
At3g16270.1 68416.m02053 expressed protein gene model                  27   7.4  
At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein co...    26   9.8  
At1g13360.1 68414.m01552 expressed protein                             26   9.8  

>At3g05070.1 68416.m00550 expressed protein
          Length = 144

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 29/70 (41%), Positives = 42/70 (60%)
 Frame = +3

Query: 231 PKPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDW 410
           P  KFR+Y PQ + LQ+ KL   E    E+ +  L  A ++K   +D    ++AP+KP+W
Sbjct: 45  PAMKFRNYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKK---ED-PFVNIAPKKPNW 100

Query: 411 DLKRXVAKKL 440
           DL+R V KKL
Sbjct: 101 DLRRDVQKKL 110


>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 883

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 231 PKPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAG 347
           P+P+ R   P D  +  S  +D E T+ EEE + + EAG
Sbjct: 326 PRPRRRCTVPSDSDVASSGESDYEYTISEEEREQIREAG 364


>At3g66652.1 68416.m00776 fip1 motif-containing protein contains Pfam
            profile PF05182: Fip1 motif
          Length = 980

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 234  KPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKV 359
            KP+    K +++A+Q   +ND E   I EEVK  +E   E++
Sbjct: 888  KPRKLMGKSEEKAMQNRDINDKEEGEIIEEVKG-VEIDNERI 928


>At3g16230.1 68416.m02048 expressed protein similar to ASC-1 complex
           subunit P50 (GI:12061189) [Homo sapiens]
          Length = 449

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 267 EALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQ 368
           E  Q SK +D    VIE E   ++ AGK  V L+
Sbjct: 74  EVAQCSKSSDVSKEVIEGETASVVSAGKHSVSLE 107


>At3g16270.1 68416.m02053 expressed protein gene model
          Length = 690

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 361 TTFSLPAS-NKSFTSSSITVGSASL 290
           T F +P++ NKSF S  + +GSAS+
Sbjct: 154 TNFQVPSNDNKSFLSEVVGIGSASI 178


>At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 637

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 418 LRSQSGF-LGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLSLDSCN 272
           +RS+SGF   +K+  SR  R + SLP+ +   T  + T+ +A+  ++  N
Sbjct: 1   MRSKSGFSFFSKMTSSRK-RPSLSLPSKSHESTDVNKTIDNAAEIIEKWN 49


>At1g13360.1 68414.m01552 expressed protein
          Length = 194

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 261 QDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLD 377
           +DE+  E+ L+  E   + +++ D+L+    + V QDLD
Sbjct: 20  RDESFDEAVLDSPEVKRLRDDLFDVLDDSDPEPVSQDLD 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,428,531
Number of Sequences: 28952
Number of extensions: 111512
Number of successful extensions: 409
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)