Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F07
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   9e-09
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  42   3e-04
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   3.8  
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)                     27   8.7  
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)                    27   8.7  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 56.4 bits (130), Expect = 9e-09
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +3

Query: 42  MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 155
           M K   ++KG+SAINEVVTREYT+NLHKR+HG+    R
Sbjct: 769 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806



 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = +3

Query: 117  LHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR--NVPFXXXX 290
            +H    G  F      + K ++K  +K+  +    V TR       K +   NVP+    
Sbjct: 750  IHNAARGCNFFLLLDFSFKMVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYRVRV 809

Query: 291  XXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 410
                  N+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 810  RLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +3

Query: 267 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTE 392
           NVP+          N+DEDS HKL+TLVT V V++ K L  E
Sbjct: 2   NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43


>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 927

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 262 TPLDQRNLFKRVSTRMSGVPICFSANF 182
           TP D  N   R  T M G+P+C +A F
Sbjct: 285 TPEDTPNDSLRTKTVMFGIPVCMTARF 311


>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 66  KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRK 185
           K K  INEV+T  Y     + L      KR  R IKE+ +
Sbjct: 213 KNKPEINEVITPRYPPGEGEVLDDASIIKRYKRQIKELEE 252


>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 164 SNQRNPKVR*KTDGNSGHSSRHSLKQIPLV*GSQKCSLPCPCEAFT 301
           S ++   ++   D   GH  +  ++Q PL     K  LPC    FT
Sbjct: 349 SKKKKQGIQGSADAEQGHHEQSLVRQRPLFAPLPKLRLPCQYNPFT 394


>SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)
          Length = 235

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -2

Query: 208 VPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAIVXLS 29
           VP C   +  +SL+AL      PT     C L   S V  S   D+P  S +GL++  LS
Sbjct: 46  VPTCSLID--LSLVALSVNLDVPT-----CSLFDLSLVALSMNLDVPTCSLIGLSLFALS 98


>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
          Length = 438

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -2

Query: 247 RNLFKRVSTRMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLP 68
           RNL KRV  R    P C   + R +     +  L      R CK +V S  +T+  +   
Sbjct: 214 RNLAKRVHERFGDAPGCEFRHRRRNSGVGTSEILTDCSGERSCKRSVTSNRSTNSSSKER 273

Query: 67  FLSPLGLAI 41
           ++ PL   I
Sbjct: 274 WMGPLASCI 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,483,509
Number of Sequences: 59808
Number of extensions: 236331
Number of successful extensions: 407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)