Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F06
         (381 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   3.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   5.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   9.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    20   9.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 102 PATASSTLRTMLQXQLVIADVDPATGRAAD 191
           P  A+ +  T +Q    I  V P+T  AAD
Sbjct: 34  PNFAAPSTSTAVQRPQAILQVRPSTSAAAD 63


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 213 CGAIRRMGESDDCIVRLTKKD 275
           CG++R + E  DC    ++K+
Sbjct: 413 CGSLREIKEVSDCDSSESRKE 433


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 317 CLTNEMLI 294
           CLTNEM++
Sbjct: 43  CLTNEMIV 50


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -3

Query: 190 SAARPVAGSTSAITSC 143
           S+++PV  +T++ T+C
Sbjct: 237 SSSQPVLSTTNSTTNC 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,817
Number of Sequences: 336
Number of extensions: 1343
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7908675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)