Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F04
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   137   1e-33
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   136   1e-33
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    26   4.0  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   7.0  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   7.0  
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    25   7.0  
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    25   7.0  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  137 bits (331), Expect = 1e-33
 Identities = 64/104 (61%), Positives = 82/104 (78%)
 Frame = +1

Query: 40  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
           ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRG 351
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R G
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPRAG 103



 Score = 29.5 bits (63), Expect = 0.33
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 311 HLSAQYVQRQYAVALXGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD-VGPGSADLEF 487
           HL A+ V   +   +  RP AP R+       R + A  G    +KK D   PG     F
Sbjct: 81  HLPAEVVPATHKRQV--RPAAP-RAGRPEPRERSSAADAGYRRAEKKDDGAAPGGFAPSF 137

Query: 488 KGGYGR 505
           +GG+GR
Sbjct: 138 RGGFGR 143


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  136 bits (330), Expect = 1e-33
 Identities = 64/104 (61%), Positives = 81/104 (77%)
 Frame = +1

Query: 40  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
           ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRG 351
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R G
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPRAG 103


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 433 NTRGSRSTSVCRSVLSRAGWGIRTTXQGHG 344
           N+       VC+  L+  G+G RTT  G G
Sbjct: 433 NSSSPELREVCKISLANGGYGARTTGAGWG 462


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 214
           +H + L+  RFL + L ++C H+   +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 365 PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 478
           P+A   S+    +Y +  A+    P    +DVG GSA+
Sbjct: 321 PEASMESSAPTESYDKPAASEEQQPLQNHSDVGNGSAE 358


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 320 RLSVAGTISGGRCKNILKY 264
           R+   G+++GG CK  LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 399 DLSSAERAGASGRPXR 352
           DLSSAER  A GRP +
Sbjct: 221 DLSSAERVVAGGRPLK 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,013
Number of Sequences: 5004
Number of extensions: 40593
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)