Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F04
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                169   1e-42
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     30   1.0  
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)                      29   1.8  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      28   4.1  
SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             27   7.2  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score =  169 bits (411), Expect = 1e-42
 Identities = 76/103 (73%), Positives = 90/103 (87%), Gaps = 1/103 (0%)
 Frame = +1

Query: 40  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
           ML+PK+NRV IYEYLFKEGV VAKKD+++PKHT++E +PNL VIKA+QSLKSRGYV+E+F
Sbjct: 1   MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKF 60

Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV-RTETVR 345
            W+H+YW LTNEGI YLR FLHLP EIVPATL+R V R ET R
Sbjct: 61  CWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETAR 103


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +2

Query: 410 RTPAAPGVAPHDK-KADVGPGS 472
           +TPA PG+AP D  K  VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386


>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
          Length = 585

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 419 AAPGVAPHDKKADVGP 466
           A PG+APHDKK+  GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -1

Query: 497 SLP*IQDQLSLDQHQPFYHEV---QHQGQQEYVCMQICPQQSGLGHQDDQXGPRRTVSVR 327
           S P +Q  +S  Q QP  H++   Q   QQ++   Q+  QQ     Q  Q  P+ + S+ 
Sbjct: 664 SAPQLQSSMSSQQQQPQQHQISAQQQLQQQQHQQQQLLQQQQ---QQQSQMPPQSSQSMT 720

Query: 326 TERLSVAGTISGGRCKN 276
             + +       G+ KN
Sbjct: 721 GGQNNTQSLTGQGQGKN 737


>SB_31497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -1

Query: 503 VHSLP*IQDQLSLDQHQPFYHEVQHQGQQEYVCMQICPQQSGLGHQD 363
           VH  P + D + + QH     +V HQ      C  ICPQ  GL  QD
Sbjct: 208 VHQHPGLVDPV-VHQHPGLVDQVVHQHPGP--CDPICPQHPGLVDQD 251


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -1

Query: 479  DQLSLDQHQPFYHEVQHQGQQEYVCMQICPQQSGLGHQDDQXGPRRTVSVRTERLSVAGT 300
            D+   D H+ + HE + QG  E +C   CP+   + H++    P R V        V   
Sbjct: 978  DESEEDGHEDYCHECE-QGGDELICCDGCPR---VYHRECHHPPLRYV---PRGSWVCSG 1030

Query: 299  ISGGRCKNILKYSIP 255
                + KN LK  +P
Sbjct: 1031 CKNPKKKNTLKLPVP 1045


>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 64   VAIYEYLFKEGVMVAKKDYHAPKHTELEKIPN 159
            +A +++L K  +   +    APK   +EK+PN
Sbjct: 1395 IADFDFLSKSAIQALRLPVPAPKVNNMEKVPN 1426


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +1

Query: 112 KDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLP 291
           +DY A   T    I  +  ++ +  + SRG+VK+ +A+    W   +  + +L  +L L 
Sbjct: 118 EDYDASGGTVY--ITAIYTLEMICKIISRGFVKDSYAYLRDTWNWLDSLVVFLS-YLSLA 174

Query: 292 PEIVPATLKRSVR 330
           P+I   +  R++R
Sbjct: 175 PDIASLSGIRTLR 187


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 359  GRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 472
            G P+  + S+E R    RT  AP   P  K     PG+
Sbjct: 6325 GEPEGTSPSSESRIPVGRTTKAPTTKPASKTTTTRPGT 6362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,248,698
Number of Sequences: 59808
Number of extensions: 316101
Number of successful extensions: 859
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)