Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F04
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   128   2e-30
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    29   2.7  
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    29   2.7  
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    27   8.4  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  128 bits (310), Expect = 2e-30
 Identities = 59/97 (60%), Positives = 72/97 (74%)
 Frame = +1

Query: 40  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
           M +PK +   IYEYLF EGV VAKKD++A  H  +E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 330
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPR 97


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 362 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 484
           + D+ + S++D +  ++TPA     P  KKA+    S+D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472



 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 362 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 490
           + D+ + S++D +  ++TPA     P  KKA+    S+D E K
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
            isoform a protein.
          Length = 1702

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 485  IQDQLSLDQHQPFYHEVQHQGQQE 414
            +Q+Q +  Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 362 RPDAPARSAEDRSAYRRTPAAPGVAP 439
           RP APAR A   +  R  PAAP   P
Sbjct: 37  RPAAPARGAPPAARGRPAPAAPANVP 62


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 124 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 255
           AP   ++  +PNL   + ++S    GY+      + FYWY+ +E
Sbjct: 16  APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57


>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
 Frame = +2

Query: 290 LLKLCLQHLSAQYVQRQYAVALXGRPDAPARSAEDRSAYR-------RTPA---APGVAP 439
           LL LC +H      +++ A +   R  APA +   R A +        TPA    P VAP
Sbjct: 610 LLHLCSEHYETPAAEKKTAASRGPRGPAPAAATPARPAAQPGNVNVAGTPAPTGTPAVAP 669

Query: 440 HDKKADVGPGSADLEFKG 493
              + D+ PG+A     G
Sbjct: 670 AAPRRDL-PGAASAATPG 686


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,309
Number of Sequences: 27780
Number of extensions: 243187
Number of successful extensions: 755
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)