Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E24
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6)                      32   0.47 
SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.1  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    29   4.4  
SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)                   28   5.8  
SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)            28   5.8  
SB_36951| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9)                     28   7.6  
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 517 GEKLGSLEYDDASVK---LGDVMCLKFIEFPCDRPCL 618
           G+ LG+L YDD   +   L DV  L   E  CD PCL
Sbjct: 19  GQDLGALAYDDTQTETLDLSDVEVLAIEETMCDPPCL 55


>SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6)
          Length = 235

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +1

Query: 136 PVYTIRNVDNVPVYSLAFSFLPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILH 315
           PVY + N+++VP   +  S  PG L  LL  S     + YN Q ++ ++ + V  A ++ 
Sbjct: 31  PVYEVNNIESVPFPGIISS--PGDLFPLLPDSIR---FIYNAQISKCEEHLSVKLAHLMS 85

Query: 316 LI 321
           L+
Sbjct: 86  LV 87


>SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 19/72 (26%), Positives = 38/72 (52%)
 Frame = +1

Query: 202 GGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILHLIHTDSHLITQEKGGKLKVFEL 381
           G  +RLL+GS +  V  Y+LQ  +V   +    +PIL L  +D  ++++++   L  ++ 
Sbjct: 242 GAYKRLLSGSIDRNVKVYDLQDYKVVHSMDY-PSPILSLAVSDDVVVSEKRKTYLNKYDK 300

Query: 382 TNSGYEEDAVIE 417
               +E  A ++
Sbjct: 301 LVKNFEYAAALD 312


>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 346  QEKGGKLKVFELTNSGYEEDAVIEVDYPGFCRFEANTKLASL-YVPEKDYKINIYNFNGE 522
            QE+GG+L +  L +S        ++DY    RF   TKLA+  Y+PE   K+ I NF   
Sbjct: 1793 QEQGGRLLI-RLGDS--------DIDYDKNFRFYMTTKLANPHYLPEVCIKVTIINFTVT 1843

Query: 523  KLG 531
            K G
Sbjct: 1844 KSG 1846


>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1046

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +1

Query: 196 LPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILHLIHTDSHLITQE--KGGKLK 369
           L GG+  +++G K GYVY    +   + Q         + + HT  H IT++  +   ++
Sbjct: 273 LLGGMCVMVSGPKEGYVYDIYNKAMLLSQYKYTSDTIKVSVCHTLLHAITKQGLETYTVR 332

Query: 370 VFELTNSGYEEDAVIEVDYPGFCRFEANTKLAS 468
           ++   + G   D V++ +       +  +K+AS
Sbjct: 333 MYAAASQGLRTDRVLQHNLSSMQNEKKESKIAS 365


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 490 YKINIYNFNGEKLGSLEYDDASVKLGDVMCLKFIEFPCDRPCLLA 624
           Y +  +NFNG  + S  Y+    +L   +  +F  FP  R C LA
Sbjct: 3   YGLLPWNFNGSPMASFSYEAFKSRLSISVLARFCSFPA-RCCSLA 46


>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 602 HGNSMNFRHITSPSFTDASSYSKEPSFSPLKL 507
           +G S++F   TSP + D ++  +EPS +P  L
Sbjct: 112 YGGSISFEDETSPRYYDNNNTYEEPSLTPAAL 143


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 602  HGNSMNFRHITSPSFTDASSYSKEPSFSPLKL 507
            +G S++F   TSP + D ++  +EPS +P  L
Sbjct: 1693 YGGSISFEDETSPRYYDNNNTYEEPSLTPAAL 1724


>SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)
          Length = 539

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +1

Query: 292 VGQAPILHLIHT-DSHLITQEKGGKLKVFEL-TNSGYEEDAVIEVDYPGFCRFEANTKLA 465
           VG    +H + T  +HLI+ ++G  LKV+++ T   Y E       +   C    +T L 
Sbjct: 92  VGHDKDVHCLLTFGAHLISVDEGSSLKVWDIKTTELYLEVGFDSKTFHITCLMHPSTYLN 151

Query: 466 SLYVPEKDYKINIYNFNGEKLGSLEYDDASVKL 564
            + +  K   + I+N         +YD+A+V +
Sbjct: 152 KILLCSKQGSMQIWNI------KTKYDNATVNV 178


>SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)
          Length = 1378

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/52 (25%), Positives = 19/52 (36%)
 Frame = +3

Query: 111 KMALLPPXSCLHYPKCR*CASLFTGFQFFTRGLREVTSRFEKRLCLRIQPPD 266
           K  + P   C  Y KC  C            G+  V   ++  +C  + PPD
Sbjct: 465 KKNVTPRSYCQMYHKCEACGKRIDMVAIQKEGVSHVCGEYKCTVCKEVVPPD 516


>SB_36951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 331 SHLITQEKGGKLKVFELTNSGYEEDAV 411
           +HLI QE+   L++ EL ++ Y++DA+
Sbjct: 12  AHLIKQEEKVNLELRELQHTAYDDDAI 38


>SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9)
          Length = 433

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 289 VSSAELYLSGGCMRKHNRFSNRLVTSLSPRVKN*KPVNKLAHYRH 155
           ++S   +L  GC    N+F N L TS+   +   K +NKL  ++H
Sbjct: 89  MASINTHLDSGC----NKFGNELNTSIKSGIGVEKRINKLDVHKH 129


>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1388

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/52 (25%), Positives = 18/52 (34%)
 Frame = +3

Query: 111 KMALLPPXSCLHYPKCR*CASLFTGFQFFTRGLREVTSRFEKRLCLRIQPPD 266
           K  + P   C  Y KC  C            G   V   ++  +C  + PPD
Sbjct: 475 KKNVTPRSYCQMYHKCETCGKRIDMIAIQKEGTSHVCGEYKCTVCKEVVPPD 526


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,409,153
Number of Sequences: 59808
Number of extensions: 349147
Number of successful extensions: 778
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)