Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E22
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 30 0.33
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 30 0.33
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 29 0.76
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 28 1.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 1.8
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 1.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 2.3
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 4.1
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 5.4
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.4
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 9.4
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 25 9.4
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 25 9.4
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 29.9 bits (64), Expect = 0.33
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 269 APKEQHLESGGDELAEVPWRHQQ 337
+P LES ++L EVPW+H Q
Sbjct: 320 SPNRAELESTPEQLLEVPWQHHQ 342
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.33
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +2
Query: 344 SYAPPISSADPYSAA----GYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYG 511
S A P +S+ P G G +A +A G G +T G DP GGYN + Y
Sbjct: 456 SIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPGTGTPGLTTPGVDPYAAYGGYNAYVQYY 515
Query: 512 MDGVF 526
++
Sbjct: 516 QQQIY 520
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 561 NAAVENGVVEGPNTPSIP*ES*GLYPPRKVIGSVPFVDHVPS 436
++++ NG ++ + PS+P ++P K G P +D+ PS
Sbjct: 119 HSSILNGPLDSLSKPSVPSNFNSMFPSSKQEGPSPLLDNQPS 160
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 28.3 bits (60), Expect = 1.0
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = -1
Query: 403 CTVITCRAVGVG 368
CT++TCRAVG+G
Sbjct: 1766 CTLVTCRAVGIG 1777
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 434 GDGTWSTNGTDPMTFLGGYNPHDS-YGMDG----VFGPSTTPFSTAAFG 565
G T + N +F G N + +G G +FG STTP +T AFG
Sbjct: 115 GSNTANNNANTGTSFSFGSNAGSTGFGSQGTGGGLFGSSTTPATTNAFG 163
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +2
Query: 395 YGTTALPYQAFGVG---DGTWSTNGTDPMTFLGGYNPHDSYGMDGVFGPSTTPFSTAAFG 565
YGTT P + + D + D T L Y H D FGP F+TA+
Sbjct: 383 YGTTFSPDNKYLLSCSEDASARLWSVDTKTALVAYKGHTGPVWDVAFGPFGHYFATASHD 442
Query: 566 QPASTFNYFH 595
Q A ++ H
Sbjct: 443 QTAQLWSCDH 452
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 341 PSYAPPISSADPYSAAGYYGTT 406
P Y+ ISSADP S AG + TT
Sbjct: 247 PGYSIEISSADPGSLAGIHITT 268
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 449 STNGTDPMTFLGGYN--PHDSYGMDGVFGPSTTPFSTAAFGQPAST 580
S+ T P T GG++ S G STT S +FG+PA+T
Sbjct: 189 SSTSTTPATGSGGFSFGKPASLGSTNNASTSTTANSGFSFGKPATT 234
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 434 GDGTWSTNGTDPMTFLGGYNPHDSYGMDGVFGPSTTPFS 550
G + S++ T P+ NP +++GM FG +T S
Sbjct: 1447 GSSSTSSSSTQPINSTIPINPLENHGMLNSFGSTTVSIS 1485
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 373 PLQRGRLLRYNSTSLSSFWSRGWDMVHK 456
PL G + + +TS++ FWSR W + K
Sbjct: 229 PLMMGNVSK--TTSVNDFWSRDWHVCTK 254
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 9.4
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Frame = +2
Query: 374 PYSAAGYYGTTALPYQ------AFGVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGVFGPS 535
PY GY G T LP+Q F G G +++ T + G YG +G+ P
Sbjct: 48 PYQPDGYAGNTMLPFQQSQPATQFNNGFG-YASQPTGSVADY-GQQQQQMYGYNGMM-PQ 104
Query: 536 TTPFSTAAFGQPAST 580
T + F QP T
Sbjct: 105 T--MNNTGFMQPQQT 117
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 405 QHFLIKLLESGMGHGPQMEQTR*LSSEDTILT 500
+H+ +K E+ +G P + + SSE T+ T
Sbjct: 940 EHYAVKYYEAVLGLSPMSQGDKMTSSESTVST 971
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 503 SYGMDGVFGPSTTPFSTAAFG 565
S G GVFG S T TA FG
Sbjct: 16 SIGSTGVFGQSNTTKPTAPFG 36
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 440 GTWSTNGTDPMTFLGGYNPHDSYGMDGVFGPSTTPFSTAAFGQPAST 580
G +ST F P S G TTPF +AA QP++T
Sbjct: 175 GQFSTQPASAGLFGQSTQPSGSTGFGLSNNTQTTPFFSAAQQQPSTT 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,426
Number of Sequences: 5004
Number of extensions: 60001
Number of successful extensions: 166
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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