Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E22
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 33 0.20
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_21478| Best HMM Match : Branch (HMM E-Value=0) 30 1.9
SB_31957| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79) 29 3.3
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.3
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37) 29 4.3
SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09) 28 5.7
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 28 5.7
SB_11846| Best HMM Match : Collagen (HMM E-Value=0.59) 28 7.5
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36) 28 7.5
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 27 9.9
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 33.1 bits (72), Expect = 0.20
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +2
Query: 356 PISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNP---HDSYGM-DGV 523
P+SS + +AGY G A PY + +GT P F G Y P + YG
Sbjct: 384 PLSSRE---SAGYGGAGATPYSGYSQMTAAAMASGT-PSEFSGSYPPGMFNSGYGYGTSA 439
Query: 524 FGPSTTPFSTAAFGQPASTFNYFHGNGDYS 613
G S++ + +A G PAS F G YS
Sbjct: 440 AGASSSTETPSAKGFPASATPEF-PLGSYS 468
>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +2
Query: 254 NQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISSADPYSAAGYYGTT 406
NQ T P Q G P + QQP Y P ++ PYS AG GT+
Sbjct: 129 NQGTPPPSTQQQPGSGG----YPMMYPQQPGYYPAGTAPPPYSEAGVAGTS 175
>SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 31.9 bits (69), Expect = 0.46
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 344 SYAPPISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGV 523
SY S DP+S +G GTT+ Y G GT+ TN GY+P MD +
Sbjct: 197 SYFIEHGSPDPWSHSGQLGTTSSAYSTSG---GTYGTNYGITAREGMGYHPISHSEMDRL 253
Query: 524 FG-PSTTPFSTAA 559
G P + F A
Sbjct: 254 AGLPPMSSFRQTA 266
>SB_21478| Best HMM Match : Branch (HMM E-Value=0)
Length = 666
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 385 GRLLRYNSTSLSSFWSRGWDMVHKWNRPDDFPRRIQSSR 501
GR + Y+ S+ W+R ++H RP D R+Q+S+
Sbjct: 306 GRTISYSLRPNSTAWARCQSLIHGSTRPSDGGYRLQNSQ 344
>SB_31957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 497 EDCILRGKSSGLFHLWTMSHPRLQKLDKEVLLY 399
+D I+RG+ SGL H T++ +Q D V++Y
Sbjct: 142 DDLIVRGQESGLLHKLTLAEAEVQIDDPIVIVY 174
>SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 251 GNQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISS 367
G +T ++ H GG+E+ E H QP Y P S
Sbjct: 56 GKALTPRRRQTHERRGGEEVREAIRDHSSQPDYRRPADS 94
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 29.5 bits (63), Expect = 2.5
Identities = 31/126 (24%), Positives = 41/126 (32%), Gaps = 1/126 (0%)
Frame = +2
Query: 212 MSAGVSDQRMKGQGNQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISSADPYSAAG 391
MS V D + G Q N P H S A PW QQP+ AP P S
Sbjct: 603 MSHPVRDTTITAHGYQEPNEPTVSHTISNAAMAA--PW--GQQPANAP--LEFPPSSEEE 656
Query: 392 YYGTTALPYQAFGVGDGTWSTNGTDPMTF-LGGYNPHDSYGMDGVFGPSTTPFSTAAFGQ 568
+ G A G W D + + + + F P T+ AF
Sbjct: 657 HDGLAATE-SGVDASSGFWDEESADELDVDASSSSSQNPFSQQATFNPVTSSAVLEAFAP 715
Query: 569 PASTFN 586
S+ +
Sbjct: 716 TVSSID 721
>SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79)
Length = 327
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/73 (35%), Positives = 31/73 (42%)
Frame = +2
Query: 428 GVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGVFGPSTTPFSTAAFGQPASTFNYFHGNGD 607
G G G TNG + GG +Y G G TT S FG + F Y G G
Sbjct: 224 GAGAGL-KTNGASGVNATGG----SAYVNGGEGGLGTTG-SEGGFGGGGAAFLYAGGGGG 277
Query: 608 YSTWGQLGRAXQY 646
YS G + RA +Y
Sbjct: 278 YS-GGGVTRATRY 289
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 513 WMVCLDL-QLLHSQQRHLDNLPPPSTIFTATVTIRHGVS*VVXNN 644
W+ L L L+H+ +R LDN P T + +++ + H V +V N
Sbjct: 1617 WVTLLLLFNLVHTNERPLDNSGKPLTFYPSSLMLGHHVRPLVFYN 1661
>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
Length = 732
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +2
Query: 350 APPISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYG----MD 517
+PP P S+ G G P A S++ T P++ P D Y +D
Sbjct: 316 SPPSGGIQPSSSQG--GIFGSPLSASNSFGPMISSSSTAPIS---SNPPEDKYSALSALD 370
Query: 518 GVFGPSTTPFSTAAFGQPAST 580
+FGPS+ T + P+ST
Sbjct: 371 TLFGPSSNAGGTVSSSMPSST 391
Score = 27.5 bits (58), Expect = 9.9
Identities = 33/134 (24%), Positives = 47/134 (35%)
Frame = +2
Query: 236 RMKGQGNQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISSADPYSAAGYYGTTALP 415
+ G G T+A +Q+L GG + + Q P + P G +G A
Sbjct: 494 QQSGWGGMQTSAAPQQNLSFGGAGMTALA--ANQFGKVPPQNAQMGPQGGFGQFGGQA-- 549
Query: 416 YQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGVFGPSTTPFSTAAFGQPASTFNYFH 595
+ G+ G + GG+ G G P P S AST
Sbjct: 550 --SSGMQPGQQGFGAQQAVGMQGGFGGMSQMG--GAGQPQMPPTS-------ASTQWGVS 598
Query: 596 GNGDYSTWGQLGRA 637
G+G S WG G+A
Sbjct: 599 GSGGGSQWGSFGQA 612
>SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09)
Length = 418
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 526 WTFNYSILNSGIWTTCLHLQ 585
W+ +Y+++ IWTT HLQ
Sbjct: 345 WSLDYNLVTYVIWTTLFHLQ 364
>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
Length = 889
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +2
Query: 350 APPISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGVFG 529
AP +S ++ G +G +A FG T S+ T GG+ + G+FG
Sbjct: 638 APSATSQPTTTSGGLFGASAPSGGVFGSSTTTASSTTAQSSTSSGGFF-GSATSSGGLFG 696
Query: 530 PSTTPFSTAA 559
++ P +T++
Sbjct: 697 SASQPSTTSS 706
>SB_11846| Best HMM Match : Collagen (HMM E-Value=0.59)
Length = 487
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 431 VGDGTWSTNGTDPMTFLGGYNPHDSY-GMDGVFGP 532
VG+G W + D MTF G G DG GP
Sbjct: 71 VGEGLWEVSKVDQMTFKQGLKGDPGRDGKDGKVGP 105
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/58 (22%), Positives = 25/58 (43%)
Frame = +2
Query: 248 QGNQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISSADPYSAAGYYGTTALPYQ 421
Q +T P+ +HL++ G + + P+ PP S P + ++ + P Q
Sbjct: 319 QPTTITAVPQPRHLQTEGSGQQQGTPDSRHAPNVIPPQQSTQPGQQSNFFSSQQQPKQ 376
>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
Length = 551
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 201 NPGQCQQACQISG*KGKGIKL 263
N G C + CQI G GKG +L
Sbjct: 381 NKGPCHRQCQIVGGSGKGARL 401
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/89 (26%), Positives = 30/89 (33%)
Frame = +2
Query: 347 YAPPISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGVF 526
YA P+ AD Y A G P G G G +G P + P + Y
Sbjct: 1187 YAEPVPPADSYPNALGAGFIPGPVFPPGAGYGPEFPSGPGPFNYGPMVGPFNGY------ 1240
Query: 527 GPSTTPFSTAAFGQPASTFNYFHGNGDYS 613
GP PF+ P Y G Y+
Sbjct: 1241 GPRFGPFNGFGPAGPGPLHGYGPDTGPYA 1269
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,763,602
Number of Sequences: 59808
Number of extensions: 474822
Number of successful extensions: 1303
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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