Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E22
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25970.1 68415.m03117 KH domain-containing protein 35 0.054
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 34 0.094
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 33 0.12
At5g55340.1 68418.m06896 long-chain-alcohol O-fatty-acyltransfer... 32 0.29
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family... 32 0.38
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 30 1.2
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 30 1.2
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar... 30 1.2
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 2.7
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 29 2.7
At2g21380.1 68415.m02544 kinesin motor protein-related 29 3.5
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 28 4.7
At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH) domain... 28 4.7
At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH) domain... 28 4.7
At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH) domain... 28 4.7
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 28 6.1
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 28 6.1
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 28 6.1
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 28 6.1
At4g00230.1 68417.m00025 subtilisin-like serine endopeptidase (X... 28 6.1
At3g16510.1 68416.m02107 C2 domain-containing protein contains s... 27 8.1
At1g67830.1 68414.m07742 GDSL-motif lipase/hydrolase family prot... 27 8.1
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 34.7 bits (76), Expect = 0.054
Identities = 38/135 (28%), Positives = 49/135 (36%), Gaps = 4/135 (2%)
Frame = +2
Query: 233 QRMKGQGNQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISSADPYSAAGY-YGTTA 409
Q G +Q + P +Q + D + + QQPS SSA P GY Y A
Sbjct: 368 QTSAGYYDQSSVPPSQQSAQGEYDYYGQ---QQSQQPSSGG--SSAPPTDTTGYNYYQHA 422
Query: 410 LPYQAFGVG---DGTWSTNGTDPMTFLGGYNPHDSYGMDGVFGPSTTPFSTAAFGQPAST 580
Y G G DG + N + GY Y G +G +T P Q A
Sbjct: 423 SGYGQAGQGYQQDGYGAYNASQQ----SGYGQAAGYDQQGGYGSTTNPSQEEDASQAAPP 478
Query: 581 FNYFHGNGDYSTWGQ 625
+ G Y T GQ
Sbjct: 479 SSAQSGQAGYGTTGQ 493
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.9 bits (74), Expect = 0.094
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = +2
Query: 383 AAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGVFGPSTTPFS-TAA 559
A G YG++ FG T+ + +G YN YG +G S F+ +
Sbjct: 197 AGGGYGSSG----GFGSSGNTYGEGSSASAGAVGDYNGSSGYGSANTYGSSNGGFAGDSQ 252
Query: 560 F-GQPASTFNYFHG-NGDYSTWGQLGRAXQY 646
F G P + F G N ++ GQ G Q+
Sbjct: 253 FGGSPVGNSSQFGGDNTQFTAGGQFGGEDQF 283
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +2
Query: 341 PSYAPPISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYGMDG 520
P++ + A S+ +G ++ P AFG T + G+ +F S+G
Sbjct: 242 PAFGASGTPAFGASSTPAFGASSTP--AFGASS-TPAFGGSSTPSFGASNTSSFSFGSSP 298
Query: 521 VFGPSTTPFSTAAFGQPASTF 583
FG ST+ F ++AFG S F
Sbjct: 299 AFGQSTSAFGSSAFGSTPSPF 319
>At5g55340.1 68418.m06896 long-chain-alcohol O-fatty-acyltransferase
family protein / wax synthase family protein contains
similarity to wax synthase similarity to wax synthase
wax synthase - Simmondsia chinensis, PID:g5020219
similar to wax synthase [gi:5020219] from Simmondsia
chinensis
Length = 333
Score = 32.3 bits (70), Expect = 0.29
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 400 YNSTSLSSFWSRGWD-MVHKWNRPDDF-PRRIQSSRFLWNGWCVWTFNYSILNSGIWTTC 573
Y +TSL FW R W+ MV RP + P R S R + +GW ++ IL + I +
Sbjct: 183 YLATSLQDFWGRRWNLMVPAILRPAVYAPMRRVSERKMSSGWALFP---GILAAFIVSGL 239
Query: 574 LHLQLF 591
+H LF
Sbjct: 240 VHELLF 245
>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
protein
Length = 513
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 428 GVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGVFGPSTTPFSTAAFG-QPASTF 583
G G +T + P + L P + +FGPS TP T FG PASTF
Sbjct: 415 GAGFSFLNTPASGPSSSLFA-TPSSTAPTSSLFGPSPTPTQTPLFGSSPASTF 466
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 482 GGYNPHDSYGMDGVFGPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAXQYD 649
G Y P YGM+ V P++ ++G P + G+ ST G+ GR+ YD
Sbjct: 195 GSYPPPTGYGMEAVPPPTSYSGGPPSYGGPRGGY----GSDAPSTGGRGGRSGGYD 246
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 482 GGYNPHDSYGMDGVFGPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAXQYD 649
G Y P YGM+ V P++ ++G P + G+ ST G+ GR+ YD
Sbjct: 195 GSYPPPTGYGMEAVPPPTSYSGGPPSYGGPRGGY----GSDAPSTGGRGGRSGGYD 246
>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
gb|U06698 neuronal kinesin heavy chain from Homo sapiens
and contains a PF|00225 Kinesin motor domain. EST
gb|AA042507 comes from this gene; identical to cDNA
MKRP1 mRNA for kinesin-related protein, GI:16902291,
kinesin-related protein [Arabidopsis thaliana]
GI:16902292
Length = 890
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 446 WSTNGTDPMTFLGGYNPHDSYGMDGVFGPSTT 541
W +G T YNP YG D VFGP TT
Sbjct: 98 WYADGD--YTIRNEYNPSLCYGFDRVFGPPTT 127
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 482 GGYNPHDSYGMD-GVFGPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAXQY 646
GGY + SYG + G +G P+S A G + F G G Y G +G + +
Sbjct: 163 GGYGGNSSYGGNAGGYG-GNPPYSGNAVGGGGGYGSNFGGGGGYGVAGGVGGSENF 217
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = +2
Query: 344 SYAPPISSADPYSAAGYYGTTALPYQAFGVGD--GTWST---NGTDPMTFLGGYNPHDSY 508
S + P A P A G G A F G G+ ST ++ F +P ++
Sbjct: 222 SSSSPAFGASPAPAFGSSGN-AFGNNTFSSGGAFGSSSTPTFGASNTSAFGASSSPSFNF 280
Query: 509 GMDGVFGPSTTPFSTAAFGQPAST 580
G FG ST+ F +++FG S+
Sbjct: 281 GSSPAFGQSTSAFGSSSFGSTQSS 304
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +2
Query: 488 YNPHDSYGMDGVFGP-STTP 544
YNP +Y D VFGP STTP
Sbjct: 139 YNPLTAYAFDKVFGPQSTTP 158
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 296 GGDELAEVPWRHQQQPSYAPPISSADPYSAAGYYGTTALPYQ 421
GG L++V + + Q S+ P A PYS GY T Y+
Sbjct: 457 GGPPLSQVSYGYGQ--SHGPEYGHAAPYSQTGYQQTYGQTYE 496
>At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NGTDPMTFLGGYNPHDSYG 511
N +PM GGYNP SYG
Sbjct: 873 NNYNPMMGQGGYNPQQSYG 891
>At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NGTDPMTFLGGYNPHDSYG 511
N +PM GGYNP SYG
Sbjct: 873 NNYNPMMGQGGYNPQQSYG 891
>At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NGTDPMTFLGGYNPHDSYG 511
N +PM GGYNP SYG
Sbjct: 873 NNYNPMMGQGGYNPQQSYG 891
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 320 PWRHQQQPSYA---PPISSADPYSAAGYYGTTALPYQAFG 430
P + Q P Y PP+ S PYSA Y +A P Q++G
Sbjct: 49 PPSYAQPPEYTQPPPPLYSTQPYSAPSY---SAPPSQSYG 85
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 320 PWRHQQQPSYA---PPISSADPYSAAGYYGTTALPYQAFG 430
P + Q P Y PP+ S PYSA Y +A P Q++G
Sbjct: 49 PPSYAQPPEYTQPPPPLYSTQPYSAPSY---SAPPSQSYG 85
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 320 PWRHQQQPSYA---PPISSADPYSAAGYYGTTALPYQAFG 430
P + Q P Y PP+ S PYSA Y +A P Q++G
Sbjct: 49 PPSYAQPPEYTQPPPPLYSTQPYSAPSY---SAPPSQSYG 85
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 320 PWRHQQQPSYA---PPISSADPYSAAGYYGTTALPYQAFG 430
P + Q P Y PP+ S PYSA Y +A P Q++G
Sbjct: 49 PPSYAQPPEYTQPPPPLYSTQPYSAPSY---SAPPSQSYG 85
>At4g00230.1 68417.m00025 subtilisin-like serine endopeptidase
(XSP1) identical to subtilisin-type serine endopeptidase
XSP1 GI:6708179 from [Arabidopsis thaliana]
Length = 749
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 552 QRHLDNLPPPSTIFTATVTIRHGV 623
+R + N+ PPS+++TATV GV
Sbjct: 666 RRRVTNVGPPSSVYTATVRAPKGV 689
>At3g16510.1 68416.m02107 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 360
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +2
Query: 347 YAPPISSADPYSAAGYYGTTALPYQAFGVGDGTWSTNGTDPMTFLGGYNPHDSYGMDGV- 523
Y PP SA YY T+ +Q++ G S + T P G+ P G
Sbjct: 242 YPPPPPSASNLYPPPYYSTSPPQHQSYPPPPG-HSFHQTQPSQSFHGFAPSSPQNQHGYG 300
Query: 524 FGPSTTP 544
+ P T+P
Sbjct: 301 YPPPTSP 307
>At1g67830.1 68414.m07742 GDSL-motif lipase/hydrolase family protein
similar to early nodulin ENOD8 [Medicago sativa]
GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
carota] GI:1911765, lanatoside 15'-O-acetylesterase
[Digitalis lanata] GI:3688284; contains Pfam profile
PF00657: Lipase/Acylhydrolase with GDSL-like motif
Length = 372
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 467 PMTFLGGYNPHDSYGMDGVFGPSTTPFSTAAFGQPASTF 583
P F G + D+ G+ FG + P ++ FG PA +
Sbjct: 29 PAIFNFGDSNSDTGGLSAAFGQAGPPHGSSFFGSPAGRY 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,945,166
Number of Sequences: 28952
Number of extensions: 331318
Number of successful extensions: 1011
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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