Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E20
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    32   0.28 
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744...    29   3.5  
01_06_0605 + 30548588-30548732,30549004-30549094,30549470-305495...    29   3.5  
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672...    28   6.1  
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683...    27   8.0  

>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 363 PETRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCIT 226
           P T  + T A   S S + C DSPT +T++G  T +     S   T
Sbjct: 4   PTTSYSTTSAMERSNSTKRCSDSPTVSTSSGRVTTTAWSSTSGAAT 49


>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
            32574554-32574887,32574915-32575037,32575193-32575394,
            32575915-32576097,32576332-32576436,32576553-32576760,
            32577025-32577170,32577321-32577443,32577490-32577698,
            32577931-32578152,32578189-32578198,32578710-32578763,
            32580841-32581052,32581620-32581772,32582071-32582158,
            32582192-32582290,32582660-32582907,32584806-32585049
          Length = 1260

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 351  VNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASG 199
            V + G  G  + R     SP F    G+   +C D A+  + +  SG+A G
Sbjct: 1140 VRLAGYEGIDLGRPAATVSPEFRVTLGTANGACVDRAAVTVLY--SGVALG 1188


>01_06_0605 +
           30548588-30548732,30549004-30549094,30549470-30549536,
           30550664-30550778,30550939-30551042
          Length = 173

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 291 LVNQGMYVWTLNSQMRLLHLLLFQGF--GASTLNWTPSPWC 407
           L N+G YV++  +   + H+L+F G   G    N    PWC
Sbjct: 112 LPNRGNYVFSDQTLETIGHILVFPGIPAGEKYFNQLSKPWC 152


>02_02_0096 -
           6727844-6727957,6728149-6728247,6728332-6728410,
           6728534-6728634,6728740-6728808,6729180-6729220,
           6729992-6730836,6730924-6731027,6731479-6732354
          Length = 775

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
 Frame = +2

Query: 176 VIRQALLGPDAKPDELNV---IQVEAMSLQE-AVKLPVAVLKVGESRH 307
           ++  A+ GP    DE+N    ++  A+ LQ  ++ LP+ +L++G SRH
Sbjct: 239 LVVDAMGGPVDDADEMNREWGVKSRALCLQRNSIVLPLGLLRIGLSRH 286


>12_02_0019 -
           12366259-12366819,12367653-12367685,12368294-12368363,
           12368582-12368712,12369627-12369673,12369803-12369879,
           12369963-12370027,12370105-12370191,12370300-12370389,
           12370972-12371037,12371608-12371664,12371749-12371850,
           12373018-12373554
          Length = 640

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 484 FKDEDNEXGEPKGKKAKMSNNAKG 555
           F D + E G  KG++ K+S N +G
Sbjct: 524 FSDSEAEDGSSKGRREKVSRNVEG 547


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,831,531
Number of Sequences: 37544
Number of extensions: 222288
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)