Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E20
(572 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016445-9|AAC69061.1| 156|Caenorhabditis elegans Hypothetical ... 31 0.58
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 28 4.1
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 28 5.4
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 27 7.2
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 27 7.2
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 27 7.2
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 9.5
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 9.5
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical... 27 9.5
>AF016445-9|AAC69061.1| 156|Caenorhabditis elegans Hypothetical
protein T05B4.13 protein.
Length = 156
Score = 31.1 bits (67), Expect = 0.58
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -3
Query: 327 NSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFN--SSGLAS 202
N+ +RTC P+ TA+ S TAS S STC ++N SS L S
Sbjct: 87 NTYCQRTCGRCPSSTTASSSSTASSS---STCTSYNADSSSLCS 127
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 134 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 256
+ EA A R+ K + ALL PDA PD N ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = -3
Query: 399 EMVSN*VYWPRXPETRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFN 220
EM+ + V+W + + +V + S R + ++P AT S ++ S+ AS+ N
Sbjct: 474 EMIIDDVFWQQPSSSTSHVYSSFAFSTPRSSSQNAPVQEEAT-SHQSTSSEPASSAPNSN 532
Query: 219 SSGLASGPNNA 187
SS +SG + A
Sbjct: 533 SSPNSSGMSPA 543
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 333 SGNSMSRRTCLDSPTFNTATGSFTAS-CSDMASTCITFNSSGLAS 202
S NS S + DS + ++T S T + C D STC ++ ++G +
Sbjct: 104 SSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSFSTCTSWAANGFCT 148
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 296 ESRHVRLDIEFPDAPVTFTLVSGXRGQ 376
E H DIE DAP T T S RG+
Sbjct: 664 EEEHHENDIEMEDAPATATPASSNRGR 690
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 63 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 179
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 63 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 179
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3
Query: 348 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCI-TFNSSGLASGPNNA*RMTS 172
+ +GA+ +S S T + SP+ +++ GS S S AST S G P ++ ++
Sbjct: 527 STSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQTPGSSVSTSA 586
Query: 171 LLL 163
+L
Sbjct: 587 AIL 589
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3
Query: 348 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCI-TFNSSGLASGPNNA*RMTS 172
+ +GA+ +S S T + SP+ +++ GS S S AST S G P ++ ++
Sbjct: 734 STSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQTPGSSVSTSA 793
Query: 171 LLL 163
+L
Sbjct: 794 AIL 796
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3
Query: 348 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCI-TFNSSGLASGPNNA*RMTS 172
+ +GA+ +S S T + SP+ +++ GS S S AST S G P ++ ++
Sbjct: 734 STSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQTPGSSVSTSA 793
Query: 171 LLL 163
+L
Sbjct: 794 AIL 796
>AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical
protein Y25C1A.4 protein.
Length = 533
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -3
Query: 348 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLAS 202
+ T A G++ S T PT +TA G TAS + ST T AS
Sbjct: 82 STTAAGGSTAS--TAAGGPTGSTAAGGSTASTAAGGSTASTAAGGSTAS 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,829,156
Number of Sequences: 27780
Number of extensions: 189739
Number of successful extensions: 553
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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