Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E19
         (342 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)            95   1e-20
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo...    95   1e-20
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo...    95   1e-20
At3g12210.2 68416.m01524 expressed protein                             31   0.27 
At3g12210.1 68416.m01523 expressed protein                             31   0.27 
At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyl...    27   2.5  
At1g60380.1 68414.m06798 apical meristem formation protein-relat...    26   5.7  
At2g42100.1 68415.m05205 actin, putative very strong similarity ...    25   10.0 
At1g67025.1 68414.m07621 hypothetical protein                          25   10.0 

>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
          Length = 56

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = +1

Query: 79  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 240
           MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 1   MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54


>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)
           ribosomal protein S29, rat, PIR:S30298
          Length = 56

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = +1

Query: 79  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 240
           MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 1   MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54


>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)
           ribosomal protein S29, rat, PIR:S30298
          Length = 56

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = +1

Query: 79  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 240
           MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 1   MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54


>At3g12210.2 68416.m01524 expressed protein
          Length = 209

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 179 YLRIK-PCLLEQDRHDRDPCPYLRG*EY-QIFAWPILR 72
           + RIK PCLL    HDRDP PYL   E  Q+  W + R
Sbjct: 38  FYRIKLPCLL----HDRDPNPYLTTSELSQLMKWKLSR 71


>At3g12210.1 68416.m01523 expressed protein
          Length = 155

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 179 YLRIK-PCLLEQDRHDRDPCPYLRG*EY-QIFAWPILR 72
           + RIK PCLL    HDRDP PYL   E  Q+  W + R
Sbjct: 38  FYRIKLPCLL----HDRDPNPYLTTSELSQLMKWKLSR 71


>At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 385

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 103 SHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDI 228
           SH  + GQ   SC        L+  +G +I    F +YAH +
Sbjct: 323 SHKAKAGQKEASCIRAVTETMLVAHFGDDIIDALFHKYAHHV 364


>At1g60380.1 68414.m06798 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 318

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 199 VCICSNRTCGLSHAC 155
           +CI +NRTCG++  C
Sbjct: 223 ICIFANRTCGVTDKC 237


>At2g42100.1 68415.m05205 actin, putative very strong similarity to
           SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
           Actin 3 {Arabidopsis thaliana}; contains Pfam profile
           PF00022: Actin
          Length = 378

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 111 SQIRTRISVMPILLQQAWLNPQVRFEHMQTVL 206
           +++R      PILL +A LNP+V  E M  ++
Sbjct: 95  NELRLEPEEHPILLTEAPLNPKVNREKMTQIM 126


>At1g67025.1 68414.m07621 hypothetical protein
          Length = 221

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 133 RSCRSCSNRHGLIRKYGLNICRQC 204
           +SCR CSN HG+     ++   QC
Sbjct: 182 QSCRGCSNSHGVCGSEPVSGSFQC 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,243,722
Number of Sequences: 28952
Number of extensions: 119869
Number of successful extensions: 276
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)