Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E18
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    28   1.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   1.4  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    25   7.2  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   9.5  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 655 VGGSTAIPWFRQLINTICT 599
           +GGSTAIP+ +QL+  + T
Sbjct: 117 LGGSTAIPYVKQLVKAVVT 135


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 612 TRFVHMFHYVLYIKYLRHTIECE 544
           T+FVH+FH  LY  Y   T  C+
Sbjct: 872 TQFVHIFHASLYTLYYVETTGCD 894


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 579 RERNETYVQIVLISCRNQGIAVEPP 653
           + R E+Y Q++   C NQG+AV+ P
Sbjct: 202 KAREESY-QVLSALCGNQGVAVDIP 225


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 248 LGVGSRHGNIFIFGIQKGLIVY 183
           L  G+  GN++I+ ++ G ++Y
Sbjct: 91  LAAGTEKGNLYIWSLKSGALIY 112


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 483 YNILMYKSAFNFNVESSECYSHIQLY 560
           Y+  + KSA NF +ES +C   + +Y
Sbjct: 300 YSERLVKSADNFTIESIQCLLILSIY 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,620
Number of Sequences: 5004
Number of extensions: 47629
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)