Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E16
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   0.91 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   1.2  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   2.8  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   4.9  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   4.9  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    24   6.4  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 229 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCC 113
           S+   GC +TE+    T+ C  E     SCC S K  CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 175  LPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKY 339
            +P+  D      T L  GY  +  D   L  L+ +L I R HD Y  +  +   Y
Sbjct: 1125 MPVPNDEFKKISTILARGYLALDEDESYLPLLSIHLLISRNHDPYLMLNLILKHY 1179


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 123  TLLLRQQELCQRISSPHAAVGPRSRSVVLHPLAV 224
            TLL++Q+ LC   S    A+   S S V+ PL +
Sbjct: 1045 TLLIKQENLCNNGSLLFEAIEQNSLSKVMIPLNI 1078


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 256 YRCQAGYRHSRTASGCRTTERDRGPTAACGLEIL*HSSC 140
           Y  + GY    T    R ++ D   T   G + L HSSC
Sbjct: 139 YLMEDGYEFPLTRDLIRRSKSDADQTPPTGFKHLRHSSC 177


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 111 PQQSTLLLRQQELCQRISSPHAAVGPRSRSVVLHPLAVRL 230
           P Q +  L  +++C R+ + H   G  S   +L+ L  RL
Sbjct: 35  PHQDSKNLLYRQICGRLLAQHVFGGAGSTQPILNQLCKRL 74


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 240 DTGIAVQQVGAERQSGIEVQRQHAGLRFSDIAPAVVVTKYFA 115
           D GI    +G E+  G    R+HA L    +  A V+TK FA
Sbjct: 647 DHGIRWVTLG-EQNFGEGSSREHAALEPRYLGGAAVITKSFA 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,996
Number of Sequences: 5004
Number of extensions: 24930
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)