Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E16
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 34 0.039
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 32 0.12
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 29 0.85
12_02_0445 - 19153580-19154269 27 3.4
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169... 27 3.4
01_06_0673 + 31089846-31090132,31090258-31090453 27 3.4
12_02_0189 + 15165485-15168694 27 6.0
02_05_1023 + 33580416-33580904 27 6.0
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677... 27 6.0
01_06_1658 - 38954953-38955145,38955310-38955368,38955541-389555... 27 6.0
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 33.9 bits (74), Expect = 0.039
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 178 PLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAIT 321
PL+LDP H+L Y + TY LV + +D HDNY+ I+
Sbjct: 679 PLELDPWELLQKHVLSDYVNNENATY-LVDWQRKIILDNYHDNYKNIS 725
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 32.3 bits (70), Expect = 0.12
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Frame = -2
Query: 355 YSETXGTWLSSW*SHGS-CRVFGLCPGSRL----RTPAYRCQAGYR---HSRTASGCR 206
YS + G WL SW + C + GLC + + TP C GY H + GC+
Sbjct: 264 YSLSNGEWLVSWVAISQPCNIHGLCGPNGICHYSPTPTCSCPPGYEMNSHGNWSQGCK 321
>12_01_0199 -
1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 29.5 bits (63), Expect = 0.85
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Frame = -2
Query: 349 ETXGTWLSSW*SHGS-CRVFGLCPGSRL----RTPAYRCQAGYRH---SRTASGCRTT 200
E GTWL SW + + C + G+C + + P C GY S + GCR T
Sbjct: 282 EVAGTWLVSWMAFSNPCIIHGVCGANAVCLYSPAPVCVCAPGYARADPSDWSRGCRPT 339
>12_02_0445 - 19153580-19154269
Length = 229
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 231 IAVQQVGAERQSGIEVQRQHAG 166
+ V+++ A R+ G+EVQR HAG
Sbjct: 107 VEVRELLARRRLGVEVQRVHAG 128
>03_04_0058 -
16915281-16915313,16915424-16915535,16915585-16916990,
16919112-16919282
Length = 573
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +3
Query: 105 GNPQQSTLLLRQQELCQRISSPHAAVGPRSRSVVLHPLAVRLCR 236
GN Q + L Q CQR+ S A G HP+ RL R
Sbjct: 105 GNLQLAWELSSQIRNCQRLLSEEAVSGKAITKEEAHPIITRLAR 148
>01_06_0673 + 31089846-31090132,31090258-31090453
Length = 160
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 313 HGSCRVFGLCPGSRLRTPAYRCQAGYRHSRTASGC 209
HG+ R+ GL P + + R RT+SGC
Sbjct: 58 HGTTRIHGLGPSRDVELLHWPISQALRERRTSSGC 92
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 273 REPGHRPNTRQLPCDHQLESQV 338
REP +TR +PC ++LE QV
Sbjct: 539 REPVAYKSTRDIPCSNRLEIQV 560
>02_05_1023 + 33580416-33580904
Length = 162
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Frame = +2
Query: 170 ACCRWTSIP---LCRSAPTCCTAM 232
A CRW S P CR CC A+
Sbjct: 119 AACRWRSAPPCGACRDVRACCRAV 142
>02_03_0199 +
16263549-16263644,16264941-16265899,16267140-16267791,
16267895-16267981,16268253-16268381,16269990-16270036,
16271337-16271438,16272720-16272843,16272981-16273028,
16273934-16274026,16274325-16274408,16274536-16274619,
16274751-16274819,16275531-16275590,16275946-16276017,
16276957-16277064,16278162-16278238,16278391-16278474,
16278617-16278728,16278778-16278810,16278811-16278900,
16279012-16279077,16279163-16279258,16279446-16279497,
16279723-16279775,16279998-16280018
Length = 1165
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 226 GYAGIQPDTYKLVSLNENLDIDRTH-DNYRAITSLKAK 336
GY + DT S N + D D H DN+ A++ LK K
Sbjct: 773 GYQAVYDDTEASPSSNNSED-DAVHQDNFEALSKLKVK 809
>01_06_1658 -
38954953-38955145,38955310-38955368,38955541-38955587,
38956264-38956294,38956507-38956569,38956760-38956855,
38956939-38957022,38957112-38957204,38957505-38957582,
38957938-38958028,38958108-38958208,38958303-38959121,
38959216-38959266
Length = 601
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 191 IPLCRSAPTCCTAMPVSS 244
+P+C +APTC PV+S
Sbjct: 3 LPVCSAAPTCSPLCPVTS 20
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,932,371
Number of Sequences: 37544
Number of extensions: 187088
Number of successful extensions: 535
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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