Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E16
         (365 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   5e-06
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              45   2e-05
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.010
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              34   0.031
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.66 
SB_12492| Best HMM Match : IncA (HMM E-Value=0.15)                     27   4.7  
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_32935| Best HMM Match : ATP-synt_8 (HMM E-Value=8.5)                26   8.1  
SB_23826| Best HMM Match : MFMR (HMM E-Value=7.3)                      26   8.1  
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)                      26   8.1  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 27/73 (36%), Positives = 39/73 (53%)
 Frame = +1

Query: 124 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 303
           +CY+ + +  R    + LP D+DP L  CTH++Y +A I P T K+ +   N   DR   
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWN--DDRL-- 454

Query: 304 NYRAITSLKAKYP 342
            Y+ I  LK K P
Sbjct: 455 -YKEINDLKLKNP 466


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 26/72 (36%), Positives = 36/72 (50%)
 Frame = +1

Query: 127 CYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDN 306
           CYY + S  R       P D+DP L  CTH+L+ +A +   T+KL    EN      H+ 
Sbjct: 25  CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77

Query: 307 YRAITSLKAKYP 342
           Y+ I +LK   P
Sbjct: 78  YQRINALKKINP 89



 Score = 36.3 bits (80), Expect = 0.008
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +1

Query: 124 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 303
           +CYY + S  R       P D+DP L  CTH+++ ++ +   T+ +    +N       D
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-----DFD 461

Query: 304 NYRAITSLKAKYP 342
            Y+ I +LK   P
Sbjct: 462 LYKRINALKKINP 474


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 124 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNEN 279
           +CYY + +  R   A+  P ++DP+L  CTH++Y +A +  D  KL     N
Sbjct: 25  VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN 73


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 34.3 bits (75), Expect = 0.031
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 124 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGI 240
           +CY+ + S  R+ +A+  P D+ PA   CTHL+Y +A I
Sbjct: 22  VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKI 58


>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 304 CRVFGLCPGSRLRTPAYRCQAGYRHSRTASGCRTTERDRGPTAAC 170
           CR+FG    + L    YR Q  Y+H+R    C T E+ R     C
Sbjct: 483 CRLFGAIFDNSLGKTRYRSQ--YKHTRRRHPCSTCEQYRSRNRNC 525


>SB_12492| Best HMM Match : IncA (HMM E-Value=0.15)
          Length = 497

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 304 CRVFGLCPGSRLRTPAYR-CQAGYRHSRTASGCRTTERDRGPTAACG-LEIL*HSSC 140
           CR+F  CP   L+T + + C  GY  +R  S  R TE  R      G L+ L   SC
Sbjct: 393 CRLFIYCPSCDLQTSSIKVCIGGYETARIISR-RGTEAYRKDVRQLGKLQQLTLQSC 448


>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 144 ELCQRISSPHAAVGPRSRSVVLHPLAVRLCRYP 242
           +L +   SPH +  P +  V  HP+ V   + P
Sbjct: 253 DLARHAGSPHVSATPTAAGVSAHPIPVATSKVP 285


>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 156  RISSPHAAVGPRSRSVVLHPLA--VRLCRYPA*HL*AGVL 269
            R +  H A+  RSR   LHP +   RL ++P  HL A VL
Sbjct: 1091 RFTIIHRAIRHRSRDSTLHPSSPTPRLIKHPDQHLVAYVL 1130


>SB_32935| Best HMM Match : ATP-synt_8 (HMM E-Value=8.5)
          Length = 133

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 24  VISHDHCNHEAIYRSS 71
           V+SH HCNH  +  SS
Sbjct: 67  VLSHSHCNHYIVISSS 82


>SB_23826| Best HMM Match : MFMR (HMM E-Value=7.3)
          Length = 540

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 223 TASGCRTTERDRGPTAACGLEIL 155
           + S CRTTE D    ++CG  IL
Sbjct: 447 SVSSCRTTETDGVDISSCGSSIL 469


>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
          Length = 551

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 267 LKREP-GHRPNTRQLPCDHQ 323
           L R+P  HRPN  + PC+H+
Sbjct: 116 LARDPYEHRPNLARAPCEHR 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,621,167
Number of Sequences: 59808
Number of extensions: 227230
Number of successful extensions: 617
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)