Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E16
(365 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr... 28 1.8
AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical ... 28 2.4
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z71264-4|CAA95831.1| 348|Caenorhabditis elegans Hypothetical pr... 27 4.1
U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z34533-5|CAA84298.1| 781|Caenorhabditis elegans Hypothetical pr... 26 9.5
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 26 9.5
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 26 9.5
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 26 9.5
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 26 9.5
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 26 9.5
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 26 9.5
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 26 9.5
AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical ... 26 9.5
AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical ... 26 9.5
>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
protein C25A8.4 protein.
Length = 1067
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 199 LSFCTHLLYGYAGIQPDT-YKLVSLNENLDIDRTHDNYRAITSLKAKYPGSHCII 360
++ CTHL+YG I DT Y S+++ ++ DN R L+ +P + ++
Sbjct: 48 ITTCTHLVYGSIPIDRDTGYPQYSVSD-VESGYDIDNIRTFMRLRKYHPNAKLLM 101
>AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical
protein W08E12.2 protein.
Length = 120
Score = 27.9 bits (59), Expect = 2.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 151 HSSCCRSNKVLCCG 110
+SSCC SN CCG
Sbjct: 88 YSSCCNSNNFSCCG 101
>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
protein F59F3.5 protein.
Length = 1199
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 213 GAERQSGIEVQRQHAGLRFSDIAPAVVVTKYFAVGYRR 100
G QS E++++ +GLRF D + +V K + Y R
Sbjct: 263 GYNNQSAHEIEKRSSGLRFGDPSSQDIVEKNTMLRYDR 300
>Z71264-4|CAA95831.1| 348|Caenorhabditis elegans Hypothetical
protein K07G5.5 protein.
Length = 348
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 154 RESQARMLPLDL--DPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 303
R+ AR+L + L D + + H + Y G+ + L+E L + THD
Sbjct: 268 RDQLARILNITLKHDKRIKYIDHSMIYYTGLNAQVELHIVLDEKLPLRITHD 319
>U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical
protein F08D12.3a protein.
Length = 289
Score = 27.1 bits (57), Expect = 4.1
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -2
Query: 331 LSSW*SHGSCRVFGLCPGSRLRTPAYRCQAGYRHSRTASGCRTTERDRGPTA---AC--G 167
LS+ S VFG CP ++ + C+A + + + C+ E D GP A AC G
Sbjct: 214 LSACKSSAGPAVFGSCPPGQVVVGSDCCEAKDVYDPSTATCQKNE-DVGPAAVDGACPAG 272
Query: 166 LEIL*HSSCC 137
+ S CC
Sbjct: 273 TSLTKGSVCC 282
>Z34533-5|CAA84298.1| 781|Caenorhabditis elegans Hypothetical
protein B0285.7 protein.
Length = 781
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 131 TTTAGAMSENLKPACCRWTSIPLCRSAPT 217
TTT+GA E++K + ++IP + PT
Sbjct: 91 TTTSGAFDESVKNSEASTSTIPTTEAVPT 119
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128
R S RTT+ +ACG + + H CR N
Sbjct: 286 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 318
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128
R S RTT+ +ACG + + H CR N
Sbjct: 290 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 322
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128
R S RTT+ +ACG + + H CR N
Sbjct: 285 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 317
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128
R S RTT+ +ACG + + H CR N
Sbjct: 192 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 224
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128
R S RTT+ +ACG + + H CR N
Sbjct: 243 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 275
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128
R S RTT+ +ACG + + H CR N
Sbjct: 325 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 357
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 226 RTASGCRTTERDRGPTAACGLEIL*HSSCCRSN 128
R S RTT+ +ACG + + H CR N
Sbjct: 399 RVPSTLRTTQASTCMNSACGQKSVLHELICRQN 431
>AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical
protein Y34B4A.4b protein.
Length = 833
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 268 LNENLDIDRTHDNYRAITSLKAKYPGSH 351
LN+++D+++ + + + L KYP SH
Sbjct: 63 LNQDVDVNQIKFSLQEVGKLSTKYPKSH 90
>AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical
protein Y34B4A.4a protein.
Length = 877
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 268 LNENLDIDRTHDNYRAITSLKAKYPGSH 351
LN+++D+++ + + + L KYP SH
Sbjct: 63 LNQDVDVNQIKFSLQEVGKLSTKYPKSH 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,122,612
Number of Sequences: 27780
Number of extensions: 150630
Number of successful extensions: 443
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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