Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E16
         (365 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    29   0.95 
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea...    28   1.7  
At5g54630.1 68418.m06802 zinc finger protein-related contains Pr...    27   2.9  
At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein ...    26   6.7  
At3g63240.1 68416.m07105 endonuclease/exonuclease/phosphatase fa...    26   8.8  
At3g19290.1 68416.m02446 ABA-responsive element-binding protein ...    26   8.8  
At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containi...    26   8.8  
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P...    26   8.8  

>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 217 LLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITS 324
           LLYGY+G+    +KL      L+ +RT  ++ A+ S
Sbjct: 130 LLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLS 165


>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
           family protein contains 8 WD-40 repeats (PF00400);
           similar to transducin homolog sazD - Homo sapiens,
           EMBL:U02609
          Length = 876

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +1

Query: 169 RMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGS 348
           ++L  D+D    FCTH   G+ G+          N+N+ I  + D    +  L AK    
Sbjct: 125 KVLVWDVDGG--FCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNTEK 182

Query: 349 HCIII 363
            C+ I
Sbjct: 183 KCLAI 187


>At5g54630.1 68418.m06802 zinc finger protein-related contains
           Prosite:PS00028 Zinc finger, C2H2 type, domain
          Length = 472

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 235 RHSRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCCGLPQVG 95
           +H R  +      R  G T ACGL I   +S C + K   C + + G
Sbjct: 320 KHPRCLADGNELLRFHGTTVACGLGINGSTSVCTAEKCCVCRIIRNG 366


>At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 431

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -2

Query: 235 RHSRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCCGLPQVG 95
           +H R  +      R  G T AC L I   +S C S K   C + + G
Sbjct: 285 KHPRCIADGNELLRFHGTTVACALGINGSTSLCSSEKCCVCRIIRNG 331


>At3g63240.1 68416.m07105 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana]; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 547

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
 Frame = +1

Query: 124 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYA--GIQPDTYKLVSLNENLDIDRT 297
           L Y+ SRS   ++ A  LP   D   S C   + G         +++  S  +       
Sbjct: 192 LFYHRSRSMRMDASASSLPQQFDRRFSVCDRFMLGDTPDDFYDQSFRYCSSEDEPADSPC 251

Query: 298 HDNYRAIT 321
           HD+Y  ++
Sbjct: 252 HDHYSPVS 259


>At3g19290.1 68416.m02446 ABA-responsive element-binding protein 2
           (AREB2) almost identical (one amino acid) to GB:AAF27182
           from (Arabidopsis thaliana); contains Pfam profile
           PF00170:bZIP transcription factor; identical to cDNA
           abscisic acid responsive elements-binding factor (ABRE)
           mRNA, partial cds GI:6739282
          Length = 431

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 27  ISHDHCNHEAIYRSSRALGPR*GPTCGNPQQST-LLLRQQELCQRISSPH 173
           I+ +  N   I      LG + G T    QQ   LL +QQ+  Q+++ PH
Sbjct: 213 ITFNGTNDSMILNQPPGLGLKMGGTMQQQQQQQQLLQQQQQQMQQLNQPH 262


>At1g18485.1 68414.m02307 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 970

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 190 DPALSFCTHLLYGYAGIQPDTYKLVSL 270
           DP LS   HL    +G+ PD++ + SL
Sbjct: 476 DPRLSLDAHLQMKISGLLPDSFTVCSL 502


>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 1016

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 208 CTHLLYGYAGIQPDTYKLVSLNENLDI---DRTHDNYRAITSLKA 333
           CTH ++ ++G+QP    +VS++  L +   + +H+N+  +   KA
Sbjct: 597 CTHAVWDFSGLQP---HIVSVSVTLFVFSGNMSHENFSELKGGKA 638


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,683,526
Number of Sequences: 28952
Number of extensions: 138971
Number of successful extensions: 372
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)