Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E15
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    75   4e-15
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    26   1.4  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   1.9  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   1.9  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    25   2.5  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    24   5.8  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    24   5.8  
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch...    24   7.6  

>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 74.5 bits (175), Expect = 4e-15
 Identities = 28/62 (45%), Positives = 38/62 (61%)
 Frame = +3

Query: 81  LDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWVDACE 260
           LD  F C FCNHEKS    +D+      + C++C +  Q     LS PIDVY+DW+DAC+
Sbjct: 19  LDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACD 78

Query: 261 SV 266
           +V
Sbjct: 79  AV 80


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 99  CPFCNHEKSCEVKMDRARNTARIQCRVC---LEDFQTTTNVLS 218
           CPFCN + S    +    N     C VC   L+D + +  ++S
Sbjct: 138 CPFCNKKFSSLDVLSLVTNEGTFACNVCGTELKDDEESAEMMS 180


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 46   GSHHQNERLQRHWISNLTA 102
            G  HQN +   HW+S  TA
Sbjct: 1144 GPDHQNTKEAEHWLSEFTA 1162


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 99  CPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTT 203
           CPFC  EK    +M R      + C  CL  F  T
Sbjct: 214 CPFCLEEKPVAARMSRC---GHVYCFSCLLRFVET 245


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 171 CRVCLEDFQTTTNVLSEPIDVYND 242
           C+V  ++F   ++V++EP+D+  D
Sbjct: 273 CKVLRKEFPNKSDVIAEPVDITVD 296


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 99  CPFCNHEKSCEVKMDRARNTARIQCRVCL 185
           CP CN+  +   +    R   R+ CR C+
Sbjct: 281 CPECNNSFTLTRRRRHCRLCGRVICRFCV 309


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 143 IHFYFAGFFMIAKRAVKLLIQCLCSLSFW 57
           IH Y   +  +  RA++  I+ LC L  W
Sbjct: 164 IHVY-RRYIQVEPRAIENYIEILCKLGLW 191


>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 120 KSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWV 248
           K  EVK DR R+T   + R+ LE    T       I+  N W+
Sbjct: 98  KEREVKTDRQRDTGSGEQRIRLERDTETLYQSQLRINQVNGWM 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,143,132
Number of Sequences: 5004
Number of extensions: 20293
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)