Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E15
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1374 + 26117560-26117672,26117761-26117831,26118389-261184...    85   1e-17
02_01_0272 - 1816791-1816902,1817002-1817023,1817771-1817841,181...    83   6e-17
06_01_0406 + 2899807-2900133                                           68   2e-12
06_03_1410 + 29977309-29977450,29978373-29978551,29979139-299792...    27   5.2  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    26   6.9  
08_02_1386 + 26646156-26646407,26646506-26646612,26646921-266470...    26   9.1  
02_02_0593 + 11964580-11964831,11964930-11965036,11965345-119654...    26   9.1  

>07_03_1374 +
           26117560-26117672,26117761-26117831,26118389-26118410,
           26118510-26118573
          Length = 89

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 32/65 (49%), Positives = 43/65 (66%)
 Frame = +3

Query: 75  EALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWVDA 254
           + LD  F+CPFCNH  S E ++D         CR+C E+F TT N L+EPID+Y++W+D 
Sbjct: 17  DKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDE 76

Query: 255 CESVN 269
           CE VN
Sbjct: 77  CERVN 81


>02_01_0272 -
           1816791-1816902,1817002-1817023,1817771-1817841,
           1817951-1818063
          Length = 105

 Score = 83.0 bits (196), Expect = 6e-17
 Identities = 32/65 (49%), Positives = 42/65 (64%)
 Frame = +3

Query: 75  EALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWVDA 254
           + LD  F CPFCNH  S E ++D         CR+CLE F T+ N L+EPID+Y++W+D 
Sbjct: 17  DKLDTVFCCPFCNHGSSVECRIDLKNLIGEASCRICLETFSTSVNALTEPIDIYSEWIDE 76

Query: 255 CESVN 269
           CE VN
Sbjct: 77  CERVN 81


>06_01_0406 + 2899807-2900133
          Length = 108

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 27/64 (42%), Positives = 38/64 (59%)
 Frame = +3

Query: 69  ATEALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWV 248
           A   L+  F+CPFC+H  + E  +D     A   C VC   + TT + L+EPIDVY++W+
Sbjct: 18  AAPKLETAFSCPFCDHGGAVECSIDIKHMIAEASCFVCQARYSTTAHALTEPIDVYSEWI 77

Query: 249 DACE 260
           D CE
Sbjct: 78  DQCE 81


>06_03_1410 +
           29977309-29977450,29978373-29978551,29979139-29979222,
           29979338-29979508,29979746-29979868
          Length = 232

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 171 CRVCLEDFQTTTNVLSEP 224
           C VCL+DFQT   V S P
Sbjct: 187 CSVCLQDFQTGEKVRSLP 204


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 108 CNHEKSCEVKMDRARNTARIQCR 176
           C  E +CE K  R RN  R  CR
Sbjct: 406 CYQELTCERKCQRLRNCGRHACR 428


>08_02_1386 +
           26646156-26646407,26646506-26646612,26646921-26647053,
           26647162-26647356,26647906-26648259
          Length = 346

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 183 LEDFQTTTNVLSEPIDVYNDWVDACESVN*IR 278
           LED   T + L   +D   DWV  CE++N +R
Sbjct: 76  LEDAGATLSTLVARLDS-KDWVMTCEALNNVR 106


>02_02_0593 +
           11964580-11964831,11964930-11965036,11965345-11965477,
           11965586-11965780,11966330-11966683
          Length = 346

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 183 LEDFQTTTNVLSEPIDVYNDWVDACESVN*IR 278
           LED   T + L   +D   DWV  CE++N +R
Sbjct: 76  LEDAGATLSTLVARLDS-KDWVMTCEALNNVR 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,949,697
Number of Sequences: 37544
Number of extensions: 116614
Number of successful extensions: 413
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)