Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E15
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3896| Best HMM Match : 7tm_1 (HMM E-Value=0.00045)                  30   0.44 
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                30   0.58 
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              28   1.8  
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_41233| Best HMM Match : RasGAP (HMM E-Value=0.029)                  26   7.1  
SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         26   7.1  
SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)         26   9.4  
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)              26   9.4  

>SB_3896| Best HMM Match : 7tm_1 (HMM E-Value=0.00045)
          Length = 538

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 281 NSYLIHTFTSIHPVIIYIYWLRQNICCCLEIF*TNSTLYSCSIPCAI 141
           N Y    F ++ PV     W + ++CC L+        Y  S+ CA+
Sbjct: 128 NRYQASVFCTVKPVYNGHTWYQASVCCTLKPVYNGHLQYQTSVCCAV 174


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 93   FNCPFCNHE-KSCEVKMDRARNTARIQCRVCLEDFQTT 203
            F C  C++E K C   + +A++  R++C  CL +   T
Sbjct: 1872 FPCHRCHNESKECRESLRKAKDAIRLRCLTCLREQDIT 1909


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = -3

Query: 275  YLIHTFTSIHPVIIYIYWLRQNICCCLEIF*TNSTLYSCSIPCAIHFYFAGFFMIAKRAV 96
            Y++  +TSIH   +Y Y L   IC  +    +   +Y+ S+   ++   A    ++ R  
Sbjct: 1611 YIVSAYTSIHCQCVYGYTLSVRICLYIV---SAYNIYTLSVRTLLYIVSAFTSTLSVRIT 1667

Query: 95   KLLIQCL 75
             +  QC+
Sbjct: 1668 SIHCQCV 1674


>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 93  FNCPFC--NHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWVDACESV 266
           F C  C  +   S  +++   R+  + +C+ C E F T   + +  + V++D + +C+  
Sbjct: 239 FPCKECGKSFRSSYLLEVHLRRHAIKTKCKYCKEGFATHKELETHVLSVHSDALVSCKLC 298

Query: 267 N 269
           N
Sbjct: 299 N 299


>SB_41233| Best HMM Match : RasGAP (HMM E-Value=0.029)
          Length = 118

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 207 NVLSEPIDVYNDWVDACES 263
           N+ + P+DVY  WV+  ES
Sbjct: 94  NINTNPLDVYKGWVNQMES 112


>SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 117 EKSCEVKMDRARNTARIQCRVCL 185
           E SC    D+ARN   + C++C+
Sbjct: 46  ENSCFNNPDKARNECPVSCKLCV 68


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 232 TSIGSDKTFVVVWKSSKQTRHCIRAV 155
           T +G DK  V VW +S++   C++ +
Sbjct: 602 TKVGKDKVRVDVWFASRKELACVKTI 627


>SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
          Length = 652

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 150 RNTARIQCRVCLEDFQTTTNVLS 218
           +N+  IQC +CLE F     VLS
Sbjct: 158 KNSRGIQCDICLEWFHLKCTVLS 180


>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
          Length = 836

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 128 RSKNGSRKEYCTNTVSSLFRRFPNN 202
           ++  G+ + YC  T + +FR FP+N
Sbjct: 262 QAPTGNPQAYCPPTYNPMFRPFPDN 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,408,898
Number of Sequences: 59808
Number of extensions: 152629
Number of successful extensions: 506
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)