Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E15
         (346 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46030.1 68418.m05661 expressed protein contains Pfam profile...    76   6e-15
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    27   2.5  
At1g59930.1 68414.m06751 hypothetical protein                          27   2.5  
At1g23550.1 68414.m02962 expressed protein                             27   3.4  
At5g58450.1 68418.m07320 expressed protein predicted proteins fr...    26   5.9  
At5g66070.1 68418.m08324 zinc finger (C3HC4-type RING finger) fa...    26   7.7  
At5g37110.1 68418.m04454 hypothetical protein                          26   7.7  
At5g13100.1 68418.m01501 expressed protein                             26   7.7  
At1g50970.1 68414.m05730 membrane trafficking VPS53 family prote...    26   7.7  
At1g20750.1 68414.m02599 helicase-related similar to BRCA1-bindi...    26   7.7  

>At5g46030.1 68418.m05661 expressed protein contains Pfam profile
           PF05129: Putative zinc binding domain (DUF701)
          Length = 120

 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 30/65 (46%), Positives = 40/65 (61%)
 Frame = +3

Query: 75  EALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWVDA 254
           + LD  F+CPFCNH  S E  +D      +  CR+C E F TT   L+E ID+Y++W+D 
Sbjct: 17  DKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDE 76

Query: 255 CESVN 269
           CE VN
Sbjct: 77  CERVN 81


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 108 CNHEKSCEVKMDRARNTARIQCR 176
           C+ E +CE K  R R+ AR  CR
Sbjct: 394 CHQELACERKCQRVRDCARHACR 416


>At1g59930.1 68414.m06751 hypothetical protein
          Length = 132

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 4   DLNQQQVWDVENQKGSHHQNE 66
           DLN ++  D+ +  GSHHQ+E
Sbjct: 90  DLNVEEDGDIPSMDGSHHQSE 110


>At1g23550.1 68414.m02962 expressed protein
          Length = 323

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 226 IGSDKTFVVVWKSSKQTRHCIRAVFLARSIFT 131
           + SD T V + K+S +     RA FLA  IFT
Sbjct: 69  VSSDTTIVTISKNSSERGITTRAKFLAFRIFT 100


>At5g58450.1 68418.m07320 expressed protein predicted proteins from
           D.melanogaster, C.elegans and S.pombe
          Length = 1065

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 138 MDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWVDAC 257
           +DR R+        C  D Q    +++EP+  ++  + AC
Sbjct: 880 LDRVRSMGSSDMSSCYSDVQVLVQIITEPLAWHSLIIQAC 919


>At5g66070.1 68418.m08324 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 221

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 165 IQCRVCLEDFQTTTNVLSEP 224
           + C VCL+DFQ    V S P
Sbjct: 174 VSCSVCLQDFQVGETVRSLP 193


>At5g37110.1 68418.m04454 hypothetical protein
          Length = 1307

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 180 CLEDFQTTTNVLSEPIDVYNDWVDACESV 266
           C E+ +T  +VL      Y +W DACE++
Sbjct: 759 CFEELRTVNDVL------YKEWKDACEAL 781


>At5g13100.1 68418.m01501 expressed protein
          Length = 354

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 96  NCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPI 227
           NC F   +K+ E +   AR+  R   R  LEDF++ +    E I
Sbjct: 112 NCLFTASQKAMEARGIDARDLRRRTVRRFLEDFRSASEEEKEVI 155


>At1g50970.1 68414.m05730 membrane trafficking VPS53 family protein
           contains Pfam domain PF04100: Vps53-like, N-terminal
          Length = 569

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 13  QQQVWDVENQKGSHHQN 63
           Q++ WD+E + G H +N
Sbjct: 376 QEETWDIEEELGCHSEN 392


>At1g20750.1 68414.m02599 helicase-related similar to BRCA1-binding
           helicase-like protein BACH1 (GI:13661819) Homo
           sapiens].;
          Length = 1179

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 23  YGTSKIKKEATTKTKGYRGTGSAI*LPVLQS*KILRSKNGSRKEYCTNT 169
           Y  S+   + T   + YR TG  + + VL          GSRK YCTN+
Sbjct: 127 YYASRTHAQITQVIREYRKTGYRVPMTVL----------GSRKRYCTNS 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,848,754
Number of Sequences: 28952
Number of extensions: 102849
Number of successful extensions: 374
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)