Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E14
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...   157   1e-39
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...   123   2e-29
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    33   0.037
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   1.8  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    25   7.4  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   9.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.8  

>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score =  157 bits (381), Expect = 1e-39
 Identities = 77/138 (55%), Positives = 100/138 (72%), Gaps = 1/138 (0%)
 Frame = +3

Query: 117 LNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALE-IQCTHTGAVPEILRGIRYHFHLL 293
           L  FLE  LPK  K+ K +LGV D  L  +I   ++ I+C  +    ++LRGIR+H   L
Sbjct: 75  LKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDLLRGIRFHGDKL 134

Query: 294 IKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREW 473
           +K L+      AQLGLGHSYSRA+VKFNV+R DNMIIQ+IA+LDQLDKD+NTF+MR++EW
Sbjct: 135 LKQLSPGDFERAQLGLGHSYSRAKVKFNVNRNDNMIIQAIAILDQLDKDINTFAMRMKEW 194

Query: 474 YSYHFPELVSIVPENHLY 527
           YS+HFPEL  IV +N+ Y
Sbjct: 195 YSWHFPELSKIVGDNYKY 212


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score =  123 bits (297), Expect = 2e-29
 Identities = 59/123 (47%), Positives = 82/123 (66%), Gaps = 2/123 (1%)
 Frame = +3

Query: 171 TLGVLDPKLGAAISE--ALEIQCTHTGAVPEILRGIRYHFHLLIKGLTLKACSVAQLGLG 344
           TL V DPKLG AI++   LE +     +V ++ RGIR H   LI GL     +   LGL 
Sbjct: 85  TLVVADPKLGNAINKLPGLEFEIISDSSVQDLYRGIREHLSSLISGLAPSDLNAMSLGLS 144

Query: 345 HSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHL 524
           HS SR ++KF+  +VD MI+Q+IALLD LDK++NT++MR+REWY +HFPE+  I+ +N  
Sbjct: 145 HSLSRHKLKFSPDKVDTMIVQAIALLDDLDKELNTYAMRVREWYGWHFPEMGKIIQDNLA 204

Query: 525 YTK 533
           Y +
Sbjct: 205 YAR 207


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 32.7 bits (71), Expect = 0.037
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 393 NMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 533
           ++I+ S ++  ++D ++      ++EWY   FPEL S+V     Y K
Sbjct: 118 HLIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCK 164


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 225 IQCTHTGAVPEILRGIRYHFHLLIKGLTLKACSVAQLGLGHSYSRARV 368
           I+C  TG +  ILR +R   H+L        C V Q  + H +S  ++
Sbjct: 527 IECIDTGHLQFILRALRPQIHVL--SAHPYGCRVIQRAIEHCHSERKL 572


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 165 LTVSSFLEDPLRGIDSNPQE-EYHFSS 88
           L V+S +E+P+  IDS   E EYH  S
Sbjct: 174 LHVNSKIEEPIHRIDSEHNEPEYHTES 200


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 172 HSVYWIPS*EQPSARPW 222
           HSV W P    PS+ PW
Sbjct: 145 HSVAWSPLVSLPSSSPW 161


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 348  SYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSY 482
            +Y+R  +K + HR  + +I S A +       +T+ +  R+W  Y
Sbjct: 1103 NYTRYELKASDHRPVSALIHSKAKMVNAQSQGSTWDVVKRKWIEY 1147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,513
Number of Sequences: 5004
Number of extensions: 50720
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)