Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E14
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                210   4e-55
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   7e-15
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_43207| Best HMM Match : MCPsignal (HMM E-Value=1.5e-33)             29   2.5  
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        29   2.5  
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     28   5.8  
SB_45382| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score =  210 bits (514), Expect = 4e-55
 Identities = 99/146 (67%), Positives = 116/146 (79%)
 Frame = +3

Query: 111 EDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHL 290
           +DL  F+E  +P  KK+SK  LGV D K+GAAI E+L I C   G + E+LRGIR HF  
Sbjct: 6   DDLKAFVEANVPTGKKKSKVLLGVADSKIGAAIQESLNICCDSGGVILEVLRGIRMHFDK 65

Query: 291 LIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIRE 470
           +IKGLT    S AQLGLGHSYSRA+VKFN+HRVDNMIIQSIALLDQLDKD+NTFSMRIRE
Sbjct: 66  MIKGLTGAMASKAQLGLGHSYSRAKVKFNIHRVDNMIIQSIALLDQLDKDINTFSMRIRE 125

Query: 471 WYSYHFPELVSIVPENHLYTKCAEFI 548
           WYSYHFPELV IV +N++Y K A++I
Sbjct: 126 WYSYHFPELVKIVNDNYMYAKVAKYI 151


>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 77.4 bits (182), Expect = 7e-15
 Identities = 33/60 (55%), Positives = 45/60 (75%)
 Frame = +3

Query: 354 SRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 533
           SR ++KF+  +VD MI+Q+I+LLD LDK++N + MR REWY +HFPEL  IV +N  Y K
Sbjct: 58  SRYKLKFSPDKVDTMIVQAISLLDDLDKELNNYVMRCREWYGWHFPELGKIVTDNLAYAK 117


>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +2

Query: 26  SKRNARVCFSPK*YVNDYDIKLLKWYSS*GFESIPRRGSSKKEETVK---MHTRCTGSQA 196
           S  ++    SP+  +     K  K  SS    S P+R + KK+  +K     ++ + S A
Sbjct: 60  SSSSSTTSSSPERNIKKKSSKAPKRQSSSSSSSSPKRKTKKKQHRLKSGNTRSQTSSSSA 119

Query: 197 RSSHQRGLGNSVHA 238
            SS +R  GN  H+
Sbjct: 120 ASSPERKSGNKTHS 133


>SB_43207| Best HMM Match : MCPsignal (HMM E-Value=1.5e-33)
          Length = 321

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
 Frame = +3

Query: 123 LFLEGGLPKRKKRSKCTLGVLDPKLGAA-ISEALEIQCTHTGAVPEILRGIRYHFHLLIK 299
           L ++ G  K    S     +     GAA +   LE      GAV ++++ I    +LL  
Sbjct: 24  LVVQQGQQKVASNSSAIQALSTEMAGAAMVISQLEKDSQQVGAVLDVIKAISEQTNLLAL 83

Query: 300 GLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDK 437
              ++A    +LG G +     V+    R      Q   L+ +L +
Sbjct: 84  NAAIEAARAGELGRGFAVVADEVRSLSQRTSGATAQIQELIGRLQQ 129


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
 Frame = +2

Query: 176  RCTGSQARSSHQRGLGNSVHAYRSSPGDFERHTLSLPLAHQRSYPQ-----SVQCGTAWP 340
            R  GS+   SH+R    S  +    P  ++R T  LP ++++SY +     S +  +   
Sbjct: 1327 RYHGSEHPRSHERSSDYS-RSKDLHPRSYDRGTDHLPRSYEKSYRREDHHRSREYSSDHR 1385

Query: 341  WPLILTSSCQVQCSPSGQHDHTINSPARST*QRR*HFLHEDK 466
             P     +       SGQ    ++SP R++ + R H+  E +
Sbjct: 1386 HPSFKHRTSSESSRHSGQSPDVLSSPVRTSYEARKHYSDEKR 1427


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +2

Query: 239 YRSSPGDFERHTLSLPLAHQRSYPQSVQCGTAWPWPLILTSSCQVQCSPSGQHDHTINSP 418
           Y  +PG     TLS P+    + P  VQ  T  P P  +T   ++  +PS    H I   
Sbjct: 280 YPENPGHSPNRTLSSPVL--LTAPAKVQPSTPTPTPTCMTPLNRLPPTPSPTTTHAIPQA 337

Query: 419 ARST 430
             ST
Sbjct: 338 YVST 341


>SB_45382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/80 (22%), Positives = 30/80 (37%)
 Frame = +2

Query: 170 HTRCTGSQARSSHQRGLGNSVHAYRSSPGDFERHTLSLPLAHQRSYPQSVQCGTAWPWPL 349
           +T  T     ++H   +    +   + P     HT ++          +    T  PWPL
Sbjct: 62  YTMATHPYTMATHTYTMATHPYTMATHPYTMATHTYTMATHTYTMATHTYTMATHTPWPL 121

Query: 350 ILTSSCQVQCSPSGQHDHTI 409
           I T  C    SP G++ H +
Sbjct: 122 IHT-PCGAP-SPDGRNKHRL 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,311,696
Number of Sequences: 59808
Number of extensions: 398896
Number of successful extensions: 3102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3102
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)