Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E14
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil... 172 2e-43
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil... 168 2e-42
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 136 7e-33
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron... 132 1e-31
At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron... 103 6e-23
At1g73210.2 68414.m08473 expressed protein 28 3.6
At1g73210.1 68414.m08472 expressed protein 28 3.6
At5g52410.2 68418.m06502 expressed protein 27 6.3
At5g52410.1 68418.m06503 expressed protein 27 6.3
At4g33920.1 68417.m04813 protein phosphatase 2C family protein /... 27 6.3
>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 499
Score = 172 bits (418), Expect = 2e-43
Identities = 84/148 (56%), Positives = 108/148 (72%), Gaps = 2/148 (1%)
Frame = +3
Query: 111 EDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHF 284
++L FLE LPK K K+ K +LGV +PK+G+ I EA +I C V E+LRG+R HF
Sbjct: 73 DELRSFLELNLPKVKEGKKPKFSLGVSEPKIGSCIFEATKIPCQSNEFVHELLRGVRQHF 132
Query: 285 HLLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRI 464
IK L AQLGL HSYSRA+VKFNV+RVDNM+IQ+I +LD LDKD+N+F+MR+
Sbjct: 133 DRFIKDLKPGDLEKAQLGLAHSYSRAKVKFNVNRVDNMVIQAIFMLDTLDKDINSFAMRV 192
Query: 465 REWYSYHFPELVSIVPENHLYTKCAEFI 548
REWYS+HFPELV IV +N+LY K ++ I
Sbjct: 193 REWYSWHFPELVKIVNDNYLYAKVSKII 220
>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 522
Score = 168 bits (409), Expect = 2e-42
Identities = 82/148 (55%), Positives = 108/148 (72%), Gaps = 2/148 (1%)
Frame = +3
Query: 111 EDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHF 284
++L FLE LPK K K+ K +LG+ +PKLG+ I EA +I C V E+LRG+R HF
Sbjct: 73 DELRSFLELNLPKVKEGKKPKFSLGLAEPKLGSHIFEATKIPCQSNEFVLELLRGVRQHF 132
Query: 285 HLLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRI 464
IK L +QLGL HSYSRA+VKFNV+RVDNM+IQ+I +LD LDKD+N+F+MR+
Sbjct: 133 DRFIKDLKPGDLEKSQLGLAHSYSRAKVKFNVNRVDNMVIQAIFMLDTLDKDINSFAMRV 192
Query: 465 REWYSYHFPELVSIVPENHLYTKCAEFI 548
REWYS+HFPELV IV +N+LY + ++ I
Sbjct: 193 REWYSWHFPELVKIVNDNYLYARVSKMI 220
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 136 bits (330), Expect = 7e-33
Identities = 64/126 (50%), Positives = 85/126 (67%)
Frame = +3
Query: 171 TLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHLLIKGLTLKACSVAQLGLGHS 350
TL V D KLG I E L+I C H AV E+LRG+R F LI GL + + LGL HS
Sbjct: 85 TLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGVRSQFTELISGLGDQDLAPMSLGLSHS 144
Query: 351 YSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYT 530
+R ++KF+ +VD MIIQ+I LLD LDK++NT++MR+REWY +HFPEL I+ +N LY
Sbjct: 145 LARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIISDNILYA 204
Query: 531 KCAEFI 548
K + +
Sbjct: 205 KSVKLM 210
>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 132 bits (320), Expect = 1e-31
Identities = 64/126 (50%), Positives = 83/126 (65%)
Frame = +3
Query: 171 TLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHLLIKGLTLKACSVAQLGLGHS 350
TL V D KLG I E L+I C H AV E+LRGIR LI GL + LGL HS
Sbjct: 84 TLAVADSKLGNIIKEKLKIVCVHNNAVMELLRGIRSQLTELISGLGDQDLGPMSLGLSHS 143
Query: 351 YSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYT 530
+R ++KF+ +VD MIIQ+I LLD LDK++NT++MR+REW+ +HFPEL IV +N LY
Sbjct: 144 LARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWFGWHFPELAKIVQDNILYA 203
Query: 531 KCAEFI 548
K + +
Sbjct: 204 KAVKLM 209
>At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 445
Score = 103 bits (248), Expect = 6e-23
Identities = 54/125 (43%), Positives = 75/125 (60%)
Frame = +3
Query: 174 LGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHLLIKGLTLKACSVAQLGLGHSY 353
L V DPKLG I+E L+I+C H AV E+LRG+R L+ GL + L L H
Sbjct: 57 LAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGLDDNDLAPVSLELSHIL 116
Query: 354 SRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 533
+R ++K + MII SI+LLD LDK++NT++ + E Y HFPEL +IV +N LY K
Sbjct: 117 ARYKLKITSDKT--MIILSISLLDDLDKELNTYTTSVCELYGLHFPELANIVQDNILYAK 174
Query: 534 CAEFI 548
+ +
Sbjct: 175 VVKLM 179
>At1g73210.2 68414.m08473 expressed protein
Length = 312
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 276 NVCLSKSPGLLLYACTEFPRPR*WLLLAWDPVHRV 172
NV + K PGL+ + P W+ +AW P++ +
Sbjct: 172 NVLVEKYPGLMTLRSVDMS-PASWMAVAWYPIYHI 205
>At1g73210.1 68414.m08472 expressed protein
Length = 314
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 276 NVCLSKSPGLLLYACTEFPRPR*WLLLAWDPVHRV 172
NV + K PGL+ + P W+ +AW P++ +
Sbjct: 174 NVLVEKYPGLMTLRSVDMS-PASWMAVAWYPIYHI 207
>At5g52410.2 68418.m06502 expressed protein
Length = 761
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 14 NNYRSKRNARVCFSPK*YVNDYDIKLLKWYSS*GFESIPRRGSSK 148
NN S ++RV FSP+ + D LL W + F +P S K
Sbjct: 339 NNMPSSESSRVTFSPESPLTRQD--LLSWKMALEFRQLPEADSKK 381
>At5g52410.1 68418.m06503 expressed protein
Length = 510
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 14 NNYRSKRNARVCFSPK*YVNDYDIKLLKWYSS*GFESIPRRGSSK 148
NN S ++RV FSP+ + D LL W + F +P S K
Sbjct: 88 NNMPSSESSRVTFSPESPLTRQD--LLSWKMALEFRQLPEADSKK 130
>At4g33920.1 68417.m04813 protein phosphatase 2C family protein /
PP2C family protein similar to Ser/Thr protein
phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
thaliana]; similar to protein phosphatase 2C
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 380
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 177 GVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFH 287
G+ + AA+ EA + + G + +I +GIR HFH
Sbjct: 292 GIARRLVRAALEEAAKKREMRYGDIKKIAKGIRRHFH 328
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,624,238
Number of Sequences: 28952
Number of extensions: 268336
Number of successful extensions: 695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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