Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E13
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    32   0.070
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   4.6  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   6.1  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    25   8.0  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   8.0  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   8.0  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 31.9 bits (69), Expect = 0.070
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
 Frame = -2

Query: 506 ITRNPSNTIQTKVKIYVMIIKTAHDILPP-----TRALHAR-*TFWRVAPVVKQPRQSNI 345
           +   P N I T V++Y  I+KT   I PP     ++ L AR  T  R    V+Q  QS +
Sbjct: 66  VREGPVNDISTIVQLYEEIVKTGFFINPPPFESYSQTLVARITTLGRPKLQVQQEAQSEV 125

Query: 344 NPSAAMHALPTMNIICRASIQINRKWNTSSN 252
              A+ +    ++ +   + + N   NT  N
Sbjct: 126 YQRASTNTQQQVSNVSHGNFKPNSSVNTEPN 156


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 240 LHPYVRRSIPLSIDLD 287
           +HPY + S P+S DLD
Sbjct: 119 IHPYSKTSFPVSYDLD 134


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 132 VSSLSNTGATCNPYRYNNVLSRRGCVLWDHVPWICTLHPYVRRSIPLSIDLD 287
           + SL +  A+ N Y Y NV S  G V+     W+ +L  Y    + L+ +L+
Sbjct: 296 LESLRHYTASLNEYYYQNVYSANGMVM---SRWVDSLSAYFPGLLVLAGELE 344


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 542 HNFQNIVNKNVVITRNPSNTIQTKVKIYVMIIKTAHDILP 423
           H   N  N + V    P N ++ K  IY+  I + H++ P
Sbjct: 306 HPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNVCP 345


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 545 EHNFQNIVNKNVVITRNPSNTI 480
           +  +QN VNK +V TRN  N +
Sbjct: 633 DEKWQNFVNKTLVETRNRDNQL 654


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 96  KVNKN*QNNGGRVSSLSNTGATCNPYRYNNVLSR 197
           K NKN  +N  RV  L+ + ++   + Y+ VLSR
Sbjct: 37  KENKNLLSNAARVKLLTFSSSSPYSFSYSPVLSR 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,606
Number of Sequences: 5004
Number of extensions: 53792
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)