Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E13
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385... 30 1.5
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 30 1.5
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406... 28 4.7
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319... 28 4.7
12_01_0149 - 1150949-1151041,1151145-1151190,1151343-1151460,115... 27 8.2
11_01_0153 - 1276090-1276182,1276416-1276630,1276710-1276806,127... 27 8.2
09_01_0052 - 867152-867255,867322-867433,868996-869066,869526-86... 27 8.2
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 8.2
>12_01_0486 +
3854889-3855014,3855897-3856089,3856206-3856310,
3856541-3856629,3856720-3856872,3857047-3857181,
3857293-3857459,3858193-3858287,3858495-3858868,
3859101-3859374,3859464-3859531
Length = 592
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 178 TIMCCLGVGVFCGTM-YRGSALSI 246
T+M CLG+G+ CG + Y GS L +
Sbjct: 559 TLMFCLGLGILCGAIGYLGSTLFV 582
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = -2
Query: 347 INPSAAMHALPTMNIICRASIQINRKWNTSSNIRMESADPRYMVPQNTPTPRQHIIVAIR 168
++P + H P NI C + ++ +T + E+A VP+ TP P + R
Sbjct: 586 VSPFSQQHNFPDTNISCLSPSNVSSMHDTLRSFPSEAASDLPGVPRITPVPVSDPWSSKR 645
Query: 167 VACGTRVRQA*H 132
VA + + H
Sbjct: 646 VAVESTITSRPH 657
>11_01_0518 +
4057428-4057538,4059609-4059801,4059921-4060025,
4060259-4060347,4060424-4060576,4060754-4060888,
4061241-4061407,4062129-4062223,4062367-4062740,
4062903-4063176,4063806-4063822
Length = 570
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 178 TIMCCLGVGVFCGTM 222
T+M CLG+G+ CGT+
Sbjct: 554 TLMFCLGLGILCGTV 568
>02_04_0195 +
20830849-20830950,20831498-20831690,20831800-20831904,
20832147-20832235,20832316-20832468,20832628-20832762,
20832849-20833015,20833519-20833613,20833707-20834080,
20834177-20834599
Length = 611
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 178 TIMCCLGVGVFCGTM-YRGSAL 240
T+M CLG+G CG + Y GS L
Sbjct: 551 TLMFCLGLGTLCGKLFYTGSML 572
>12_01_0149 -
1150949-1151041,1151145-1151190,1151343-1151460,
1151541-1151637,1151711-1151908,1152024-1152086,
1152384-1152443,1152558-1152660,1154398-1154507
Length = 295
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 372 YRCNSPESL-SGVESSGRWENIVCRFYDH 455
Y+ SP+SL V G W N+VC DH
Sbjct: 49 YQTVSPKSLVKSVLEEGGWSNLVCSREDH 77
>11_01_0153 -
1276090-1276182,1276416-1276630,1276710-1276806,
1276880-1277077,1277266-1277328,1277628-1277687,
1277826-1277928,1280045-1280154
Length = 312
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 372 YRCNSPESL-SGVESSGRWENIVCRFYDH 455
Y+ SP+SL V G W N+VC DH
Sbjct: 49 YQTVSPKSLVKSVLEEGGWSNLVCSREDH 77
>09_01_0052 -
867152-867255,867322-867433,868996-869066,869526-869623,
869988-870060,872280-872670
Length = 282
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +3
Query: 342 IYVTLSRLFDYRCNSPESLSGVESSGRWENIVCRFYDHNIYF----DLCL 479
IY+T+ + DY+CNS + S+ + E I + D +IY DLCL
Sbjct: 223 IYITI--VIDYQCNSWIYDTNATSANKEEAIAWQTIDPSIYLQQYEDLCL 270
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 474 KGQNICYDHKNGTRY-SPTDPSSPRPINFL 388
KGQ++C HK T+Y + +PS P+ +
Sbjct: 613 KGQDLCQTHKTSTKYVADGNPSINTPVEHI 642
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,727,732
Number of Sequences: 37544
Number of extensions: 340016
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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