Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E13
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_26378| Best HMM Match : Transposase_21 (HMM E-Value=2.2e-06)        28   4.8  
SB_43587| Best HMM Match : DUF216 (HMM E-Value=3.9)                    28   4.8  
SB_1694| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.8  
SB_51479| Best HMM Match : Mak16 (HMM E-Value=7.2)                     28   6.3  
SB_3977| Best HMM Match : EGF (HMM E-Value=1.8e-09)                    28   6.3  
SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = -2

Query: 572  VDDTIFXGFEHNF----QNIVNKNVVITRNPSNTIQTKVKIYVM--IIKTAHDILPP 420
            +DD    GF   F    +++ N  + + R    +++  VK+ ++    KT HD+LPP
Sbjct: 5080 LDDDAVIGFVQTFKVVPEDVGNATLTVQRTGDTSVEHIVKVTIVDDSAKTGHDVLPP 5136



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = -2

Query: 572  VDDTIFXGFEHNF----QNIVNKNVVITRNPSNTIQTKVKIYVM--IIKTAHDILPP 420
            +D+    GF   F    +++ N  + + R    +++  VK+ ++    KT HDILPP
Sbjct: 3846 LDNDAVIGFVQTFKIVPEDVGNATLTVQRTGDTSVEHIVKVTIVDDSAKTGHDILPP 3902


>SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 138 SLSNTGATCNPYRYNNVLSRRGCVLWDHVPWICTL 242
           SL    A   P+RY  +L++  C +W    W+ +L
Sbjct: 110 SLDRCLAVTKPFRYQQLLTKTRCKIWIAAAWVFSL 144


>SB_26378| Best HMM Match : Transposase_21 (HMM E-Value=2.2e-06)
          Length = 854

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 447 YDHNIYFDLCLDSVARISSNNNILVHNILEIMFKTXKYCIINLY 578
           YD N+Y +LC   +     N + L++     +FK+ K  I  LY
Sbjct: 250 YDGNLYHELCQHGILSSKDNISFLMNTDGVPVFKSSKVSIWPLY 293


>SB_43587| Best HMM Match : DUF216 (HMM E-Value=3.9)
          Length = 490

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 447 YDHNIYFDLCLDSVARISSNNNILVHNILEIMFKTXKYCIINLY 578
           YD N+Y +LC   +     N + L++     +FK+ K  I  LY
Sbjct: 297 YDGNLYHELCQHGILSSKDNISFLMNTDGVPVFKSSKVSIWPLY 340


>SB_1694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 782

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 447 YDHNIYFDLCLDSVARISSNNNILVHNILEIMFKTXKYCIINLY 578
           YD N+Y +LC   +     N + L++     +FK+ K  I  LY
Sbjct: 276 YDGNLYHELCQHGILSSKDNISFLMNTDGVPVFKSSKVSIWPLY 319


>SB_51479| Best HMM Match : Mak16 (HMM E-Value=7.2)
          Length = 317

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -2

Query: 533 QNIVNKNVVITRNPSNT-IQTKVKIYVMIIKTAHDILPPTRALHAR*TFW--RVAPVVKQ 363
           +  V   + +TR P NT I    ++   I KT   + PP+  +H   T W   +  +V  
Sbjct: 194 EGCVRGTIRLTRLPPNTEIALNQELVANICKTVVKLRPPSLKIHRIPTIWTNNLQLLVNS 253

Query: 362 PRQSNI 345
           PR + +
Sbjct: 254 PRPNKM 259


>SB_3977| Best HMM Match : EGF (HMM E-Value=1.8e-09)
          Length = 108

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 300 DDIHCGKCMHGSTRIYVTLSRLFDYRCNSPESLSGVESSG 419
           D  H   CM+G T I    + L +YRC  PE   G    G
Sbjct: 20  DKCHAMPCMNGGTCI----ATLNNYRCQCPEGYRGSNCEG 55


>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -2

Query: 383 VAPVVKQPRQSNINPSAAMHALPTMNIICRAS-IQINRKWNTSSNIRMESADPRYMVPQN 207
           ++P V  PRQ    P +     P  +I  R S    NR+  +    R  SA  R    + 
Sbjct: 104 LSPPVSTPRQQRHTPPSFT---PRSSISRRRSDTPKNRRRISVPRRRAGSALGRLTTNKK 160

Query: 206 TPTPRQHIIVAIRVACGT 153
           TP  R +++ A R A GT
Sbjct: 161 TPPRRTNLLEAFRAAAGT 178


>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 154 VPHATLIATIMCCLGVGVFCG 216
           VPH  +I T+  CLG+G+F G
Sbjct: 940 VPHVEIIITV--CLGIGLFSG 958


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,623,782
Number of Sequences: 59808
Number of extensions: 414861
Number of successful extensions: 983
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)