Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E13
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-3|AAK31486.2|  275|Caenorhabditis elegans Hypothetical pr...    38   0.004
Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL031254-3|CAJ76926.1|  180|Caenorhabditis elegans Hypothetical ...    27   9.6  
AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical ...    27   9.6  
AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U23139-3|AAK31486.2|  275|Caenorhabditis elegans Hypothetical
           protein F13H8.4 protein.
          Length = 275

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/99 (20%), Positives = 35/99 (35%)
 Frame = +1

Query: 283 WIEALQMIFIVGSAXXXXXXXXXXXXXXXXXXXXRQKVYRAWRARVGGRISCAVFMIITY 462
           W++ +Q+ FIV +                     R+ +Y+   AR GG+ +C + M+I +
Sbjct: 24  WLDKVQVFFIVIAVLMGLFSLFFLCIGFTATGGTRETMYKDDEARCGGKFACVIAMLIDF 83

Query: 463 ILTFVWIXXXXXXXXXXXXXXXXWKLCSKPXNIVSSTCI 579
            L   W+                 +LC          CI
Sbjct: 84  FLIIAWLFIISIVSWLCIFYYFFDRLCMNLPGYTDGDCI 122


>Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical
           protein W08D2.3b protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +1

Query: 139 ACLTRVPHATLIATIMCCLGVGVFCGTMYRGSALSILMFDEVFHFRLIWIEALQMIFIVG 318
           AC   +PHA  I  ++C + + VF GT+  G +LS ++ + V  F+      LQ + ++G
Sbjct: 108 ACFLALPHAAHIILLLCIVFI-VF-GTVL-GISLSAVISNFVVIFKQQSFLLLQFLHLIG 164

Query: 319 S 321
           +
Sbjct: 165 A 165


>Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical
           protein W08D2.3a protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +1

Query: 139 ACLTRVPHATLIATIMCCLGVGVFCGTMYRGSALSILMFDEVFHFRLIWIEALQMIFIVG 318
           AC   +PHA  I  ++C + + VF GT+  G +LS ++ + V  F+      LQ + ++G
Sbjct: 111 ACFLALPHAAHIILLLCIVFI-VF-GTVL-GISLSAVISNFVVIFKQQSFLLLQFLHLIG 167

Query: 319 S 321
           +
Sbjct: 168 A 168


>AL031254-3|CAJ76926.1|  180|Caenorhabditis elegans Hypothetical
           protein 4R79.1b protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 551 GFEHNFQNIVN-KNVVITRNPSNTIQTKVKIYVMIIKTAHDILP 423
           G  +++++I++  +   +RN  NTI+T    +  +I TA D+ P
Sbjct: 46  GENYDYKSIMHYDSTAFSRNGRNTIETVENGFTQVIGTAMDLSP 89


>AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical
           protein 4R79.1a protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 551 GFEHNFQNIVN-KNVVITRNPSNTIQTKVKIYVMIIKTAHDILP 423
           G  +++++I++  +   +RN  NTI+T    +  +I TA D+ P
Sbjct: 210 GENYDYKSIMHYDSTAFSRNGRNTIETVENGFTQVIGTAMDLSP 253


>AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical
           protein C51F7.1 protein.
          Length = 947

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 330 HACTSHNEYHLQGFNPNQSKVEYFVEHKDGECRSTVHGPTKHTHA*TTH 184
           H+  SH  YH+ G+  N +++   + ++D       HGPT  THA + H
Sbjct: 661 HSMPSH--YHVNGYYRNSNQI---LTYEDAPIH---HGPTLLTHAQSLH 701


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,722,049
Number of Sequences: 27780
Number of extensions: 304453
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)