Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E13
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48110.1 68418.m05943 terpene synthase/cyclase family protein       29   3.0  
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f...    29   3.0  
At1g10950.1 68414.m01257 endomembrane protein 70, putative             29   3.0  
At4g17700.1 68417.m02644 hypothetical protein contains Pfam prof...    28   5.2  
At3g14740.2 68416.m01864 PHD finger family protein similar to zi...    27   6.8  
At3g14740.1 68416.m01863 PHD finger family protein similar to zi...    27   6.8  

>At5g48110.1 68418.m05943 terpene synthase/cyclase family protein 
          Length = 575

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 342 IYVTLSRLFDYRCNSPESLSGVESSGRWENIVCRFYDH 455
           ++  +  L+D  C  PE+++  E+  RWE       DH
Sbjct: 327 LWTIIDDLYDAYCTLPEAIAFTENMERWETDAIDMPDH 364


>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 923

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 432 IVCRFYDHNI--YFDLCLDSVARISSNNNILVHNILEI 539
           ++   YDH I  YF++ LDS++ I  + +I+ + + +I
Sbjct: 536 LLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRLNQI 573


>At1g10950.1 68414.m01257 endomembrane protein 70, putative
          Length = 589

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 178 TIMCCLGVGVFCGTM-YRGSALSI 246
           T+M CLG+G+ CG + Y GS L +
Sbjct: 556 TMMFCLGLGILCGAVGYLGSNLFV 579


>At4g17700.1 68417.m02644 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 254

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 500 RNPSNTIQTKVKIYVMIIKTAHDILPPTRALHAR*TFWRV 381
           R+P N   +K+ I ++ I+T  ++ PP+  L AR  F+ +
Sbjct: 168 RSPKNPNLSKLVIVMVAIETKDNMEPPSERLKARNAFFYI 207


>At3g14740.2 68416.m01864 PHD finger family protein similar to
           zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
           contains PHD-finger domain PF00628
          Length = 343

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/59 (23%), Positives = 23/59 (38%)
 Frame = +3

Query: 294 PADDIHCGKCMHGSTRIYVTLSRLFDYRCNSPESLSGVESSGRWENIVCRFYDHNIYFD 470
           P  D  C +C+    R  +    L    C +        + GRW +I C  +   +YF+
Sbjct: 191 PEGDWFCRQCLSSKNREKIFSCCL----CTTKGGAMKPTNDGRWAHITCALFVPEVYFE 245


>At3g14740.1 68416.m01863 PHD finger family protein similar to
           zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
           contains PHD-finger domain PF00628
          Length = 341

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/59 (23%), Positives = 23/59 (38%)
 Frame = +3

Query: 294 PADDIHCGKCMHGSTRIYVTLSRLFDYRCNSPESLSGVESSGRWENIVCRFYDHNIYFD 470
           P  D  C +C+    R  +    L    C +        + GRW +I C  +   +YF+
Sbjct: 191 PEGDWFCRQCLSSKNREKIFSCCL----CTTKGGAMKPTNDGRWAHITCALFVPEVYFE 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,853,956
Number of Sequences: 28952
Number of extensions: 278202
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)