Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E11
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)          100   5e-22
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       27   6.1  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score =  100 bits (240), Expect = 5e-22
 Identities = 47/59 (79%), Positives = 50/59 (84%)
 Frame = +3

Query: 258 KVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 434
           KVHGSLARAGKVK QTPKV+        TGRAKRR+QYNRRFVNVVQTFGRRRGPNSN+
Sbjct: 2   KVHGSLARAGKVKSQTPKVDAQEKKKKKTGRAKRRMQYNRRFVNVVQTFGRRRGPNSNA 60


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 302 NPQSGKTTKKEEEDWP 349
           NP  GKT  +E++DWP
Sbjct: 384 NPPQGKTPIEEDDDWP 399


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 186 KGAPHNDRVRSSSPTAARVRMRS 118
           +G+PH  R R+SSP  AR R  S
Sbjct: 729 RGSPHQPRGRASSPGGARGRAAS 751


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,098,394
Number of Sequences: 59808
Number of extensions: 214480
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)