Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E10
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 153 2e-46
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 153 2e-37
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 29 2.5
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 29 2.5
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 5.8
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.6
SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.6
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.6
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.6
SB_1761| Best HMM Match : ERF (HMM E-Value=6.8) 28 7.6
SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9) 28 7.6
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 7.6
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 153 bits (370), Expect(2) = 2e-46
Identities = 68/119 (57%), Positives = 84/119 (70%)
Frame = +3
Query: 249 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 428
++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG
Sbjct: 95 RIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGT 154
Query: 429 XXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIXRFP 605
EYNVE VD PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PHS+ RFP
Sbjct: 155 DDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFP 213
Score = 51.2 bits (117), Expect(2) = 2e-46
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +3
Query: 177 QDKNKYNTPKYRLIVRLSNKDVTCQ 251
QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 34 QDKNKYNTPKYRFVVRITNKDIICQ 58
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 125 RRREGKTDYYARKRL 169
RR +GKTDYYARKRL
Sbjct: 17 RRSQGKTDYYARKRL 31
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 153 bits (370), Expect = 2e-37
Identities = 69/112 (61%), Positives = 80/112 (71%)
Frame = +3
Query: 252 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 431
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 432 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 587
EYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 577 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 464
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 577 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 464
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 213 LIVRLSNKDVTCQVAYSRIEGD-HIVC 290
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 148 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 41
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 261 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 359
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 132 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKGR 4
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 1200 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 1241
>SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 824
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 132 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKGR 4
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 663 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 704
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 132 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKGR 4
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 263 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 304
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 132 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKGR 4
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 356 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 397
>SB_1761| Best HMM Match : ERF (HMM E-Value=6.8)
Length = 299
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 132 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKGR 4
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 97 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKNR 138
>SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9)
Length = 348
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 132 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKGR 4
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 110 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 151
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 65 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 151
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 132 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKGR 4
RRL+ Y +Y F TL PI+ + +T+ + T TK K R
Sbjct: 755 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSR 796
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,791,301
Number of Sequences: 59808
Number of extensions: 408850
Number of successful extensions: 1160
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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