Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_E09
(386 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 3e-04
SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06) 28 3.1
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1) 27 5.3
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13) 27 7.1
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033) 26 9.3
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 26 9.3
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 26 9.3
SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26) 26 9.3
SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 26 9.3
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 26 9.3
>SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 41.1 bits (92), Expect = 3e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -3
Query: 222 HWSVKAXXXXXXXXXRMRHLKIVRRRFRNGFKE 124
+WS+KA RMRHLK+V RRF+NGF+E
Sbjct: 2 NWSMKAKRRTTTGTGRMRHLKLVYRRFQNGFQE 34
>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
Length = 819
Score = 27.9 bits (59), Expect = 3.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 279 CDMTIYHIFCITYGSYFGA 335
CD +IYHI+ + Y ++GA
Sbjct: 355 CDSSIYHIYRLKYAVHYGA 373
>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
Length = 364
Score = 27.1 bits (57), Expect = 5.3
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = -2
Query: 253 WISCSKITILPLVSEG*AQEDYWNWPHASF 164
W++C K+ +LP+ ++ Y W + F
Sbjct: 136 WVNCDKVRLLPMRADEVGARVYARWTNGQF 165
>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 27.1 bits (57), Expect = 5.3
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = -2
Query: 253 WISCSKITILPLVSEG*AQEDYWNWPHASF 164
W++C K+ +LP+ ++ Y W + F
Sbjct: 297 WVNCDKVRLLPMRADEVGARVYARWTNGQF 326
>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
Length = 470
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -1
Query: 245 LQQNYDPTTGQ*RLSAGRLLELAACVI*RLSGGASVMVLKKGKPTPPK 102
+Q+ Y PT+G + L++ + GAS+ K G P P +
Sbjct: 410 MQRKYSPTSGPSSYKQKKHLQVTLSSAANTTKGASLPATKSGPPVPKR 457
>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 333 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 214
R NK C CG S QKS C G + + HW+
Sbjct: 217 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 257
>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
Length = 311
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 174 MRHLKIVRRRFRNGFKERETNAAQEGCS 91
M H K++ RNG ERE CS
Sbjct: 222 MDHWKVLEEELRNGINEREKELEMLRCS 249
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 333 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 214
R NK C CG S QKS C G + + HW+
Sbjct: 43 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 83
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 333 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 214
R NK C CG S QKS C G + + HW+
Sbjct: 218 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 258
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 333 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 214
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26)
Length = 245
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 333 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 214
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 333 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 214
R NK C CG S QKS C G + + HW+
Sbjct: 135 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 175
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 333 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 214
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 333 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 214
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQVQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,313,313
Number of Sequences: 59808
Number of extensions: 187034
Number of successful extensions: 582
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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