Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E08
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   120   1e-28
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   0.99 
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   3.0  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  120 bits (290), Expect = 1e-28
 Identities = 56/67 (83%), Positives = 60/67 (89%)
 Frame = +2

Query: 317 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESX 496
           PEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+    LPP WKYES 
Sbjct: 85  PEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVGALPPTWKYESA 144

Query: 497 TASALVA 517
           TASALVA
Sbjct: 145 TASALVA 151



 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 43/66 (65%), Positives = 50/66 (75%)
 Frame = +3

Query: 102 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 281
           SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+ QVRF+TG+KI+R
Sbjct: 14  SALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITGQKIMR 73

Query: 282 YHEGNG 299
             + NG
Sbjct: 74  ILKANG 79


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 362 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 463
           K+  R +K+ D ++  +LVESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 329 YYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 481
           YYL KKA  + +    N  +K+SK   I +E +  +       +  L  +W
Sbjct: 202 YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSPVNLEKYLTKSW 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,432
Number of Sequences: 5004
Number of extensions: 40369
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)