Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E08
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)        111   3e-25
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)                   28   4.1  
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)              28   5.5  
SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)              27   7.2  
SB_24225| Best HMM Match : TF_Otx (HMM E-Value=7.2)                    27   9.6  

>SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)
          Length = 135

 Score =  111 bits (267), Expect = 3e-25
 Identities = 50/56 (89%), Positives = 54/56 (96%)
 Frame = +2

Query: 317 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 484
           PEDLY LIKKAVA+RKHLE+NRKDKDSKFRLIL+ESRIHRLARY+KTK VLPPNWK
Sbjct: 80  PEDLYCLIKKAVAVRKHLEKNRKDKDSKFRLILIESRIHRLARYFKTKRVLPPNWK 135



 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 41/55 (74%), Positives = 48/55 (87%)
 Frame = +3

Query: 135 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRYHEGNG 299
           W KLT+DDVKEQ+YKL KKGLTPSQIGV+LRDS+GVAQVR++TG KILR  +  G
Sbjct: 20  WQKLTSDDVKEQMYKLAKKGLTPSQIGVILRDSYGVAQVRYITGNKILRILKAKG 74


>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
          Length = 1105

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/84 (23%), Positives = 35/84 (41%)
 Frame = +3

Query: 45  SKKPQTWVVCTLLVRVSPXSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVML 224
           S  P   ++ T+ V++     L  R+S P    + A     ++ +       P+ +  ML
Sbjct: 225 SSSPPLRLILTIPVQIVAARGLGQRKSAPPTTAVVASSTLHKLIEASITKTVPTILANML 284

Query: 225 RDSHGVAQVRFVTGKKILRYHEGN 296
            +   VAQ  F+   KI    EG+
Sbjct: 285 INGSFVAQPTFLPYAKIPTDTEGS 308


>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
          Length = 763

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 177 KLGKKGLTPSQIGVMLRD 230
           KL K+GL+PSQI V+ RD
Sbjct: 465 KLNKEGLSPSQIYVLARD 482


>SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)
          Length = 845

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 22  CRCQIGDLVKSRKHGSYARSW*GYLP 99
           CR +IG + KS KHGSY+ S  G+ P
Sbjct: 77  CRSRIG-IQKSTKHGSYSLSIPGHDP 101


>SB_24225| Best HMM Match : TF_Otx (HMM E-Value=7.2)
          Length = 205

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 155 VGSQFQPGRDTAAVRQRRXGRYPYQERAYDPCLRLFTKSPI 33
           + +  +P  ++A + Q +    PY++R Y P L L   +P+
Sbjct: 152 ISTSIKPHTNSANINQHQA---PYKQRQYQPALSLIQTAPL 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,802,385
Number of Sequences: 59808
Number of extensions: 315931
Number of successful extensions: 681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)