Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E08
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   118   2e-27
Z49071-3|CAA88875.1|  319|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z79603-4|CAB01894.1|  800|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    27   6.3  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  118 bits (285), Expect = 2e-27
 Identities = 54/67 (80%), Positives = 62/67 (92%)
 Frame = +2

Query: 317 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESX 496
           PEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVESRIHRLARYYKTK  LPP WKYES 
Sbjct: 85  PEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYKTKRQLPPTWKYESG 144

Query: 497 TASALVA 517
           TA++LV+
Sbjct: 145 TAASLVS 151



 Score = 93.9 bits (223), Expect = 6e-20
 Identities = 42/66 (63%), Positives = 53/66 (80%)
 Frame = +3

Query: 102 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 281
           SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV QVR + G KI R
Sbjct: 14  SAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGVGQVRRLAGNKIFR 73

Query: 282 YHEGNG 299
             +  G
Sbjct: 74  ILKSKG 79


>Z49071-3|CAA88875.1|  319|Caenorhabditis elegans Hypothetical
           protein T22C8.3 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 140 QPGRDTAAVRQRRXGRYPYQERAYDP 63
           +P RDT A  Q   G +  ++RA+DP
Sbjct: 143 KPNRDTIAEEQETDGEHGVKQRAFDP 168


>Z79603-4|CAB01894.1|  800|Caenorhabditis elegans Hypothetical
           protein M163.4 protein.
          Length = 800

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 86  KGISQXGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSL 205
           +GI Q G+     C Y+    C R  G + + W + S +L
Sbjct: 705 EGIEQFGSFTEKACYYMTAARCHRLLGKDPRMWLKKSRAL 744


>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 170 NLQTWKEGSHSLTNWCNAEGFTW 238
           N++TW +    LTN  NA G  W
Sbjct: 467 NIETWDKAEADLTNALNASGRKW 489


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 170 NLQTWKEGSHSLTNWCNAEGFTW 238
           N++TW +    LTN  NA G  W
Sbjct: 508 NIETWDKAEADLTNALNASGRKW 530


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 134 LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKD 274
           +V   C  C  T L   + G+H L+    A G++  CP  I N + +
Sbjct: 91  IVSFTCPYCNITGLTERQFGTHVLSQHPEAPGYSVICPLCIGNTEME 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,565
Number of Sequences: 27780
Number of extensions: 227074
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)