Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E08
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi...   122   2e-28
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP...   122   2e-28
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot...    36   0.022
At1g65720.1 68414.m07459 expressed protein                             29   1.5  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        28   4.5  
At2g35780.1 68415.m04390 serine carboxypeptidase S10 family prot...    28   4.5  
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ...    28   4.5  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    27   7.8  
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put...    27   7.8  
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim...    27   7.8  

>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
           to ribosomal protein S13;  PF00312 (View Sanger Pfam):
           ribosomal protein S15; identical to cDNA AtRPS13A mRNA
           for cytoplasmic ribosomal protein S13 GI:6521011
          Length = 151

 Score =  122 bits (293), Expect = 2e-28
 Identities = 58/67 (86%), Positives = 60/67 (89%)
 Frame = +2

Query: 317 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESX 496
           PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES 
Sbjct: 85  PEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 144

Query: 497 TASALVA 517
           TAS LVA
Sbjct: 145 TASTLVA 151



 Score = 95.1 bits (226), Expect = 3e-20
 Identities = 44/66 (66%), Positives = 52/66 (78%)
 Frame = +3

Query: 102 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 281
           SALPY+RS P+WLK T+ DV E I K  KKGLTPSQIGV+LRDSHG+ QV+ VTG KILR
Sbjct: 14  SALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILR 73

Query: 282 YHEGNG 299
             + +G
Sbjct: 74  ILKAHG 79


>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
           AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
           Arabidopsis thaliana,AB031739
          Length = 151

 Score =  122 bits (293), Expect = 2e-28
 Identities = 58/67 (86%), Positives = 60/67 (89%)
 Frame = +2

Query: 317 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESX 496
           PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES 
Sbjct: 85  PEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 144

Query: 497 TASALVA 517
           TAS LVA
Sbjct: 145 TASTLVA 151



 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 44/66 (66%), Positives = 51/66 (77%)
 Frame = +3

Query: 102 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 281
           SALPY+RS P+WLK T  DV E I K  KKGLTPSQIGV+LRDSHG+ QV+ VTG KILR
Sbjct: 14  SALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILR 73

Query: 282 YHEGNG 299
             + +G
Sbjct: 74  ILKAHG 79


>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II (CP-MII)
           GB:CAA70815 [Hordeum vulgare]
          Length = 459

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 140 QPGRDTAAVRQRRXGRYPYQERAYDPCLRLFT 45
           +P   T A+++   GRYP+  RAYDPC   ++
Sbjct: 286 KPCNSTVALKRFLKGRYPWMSRAYDPCTERYS 317


>At1g65720.1 68414.m07459 expressed protein
          Length = 180

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -2

Query: 271 FLPVTNLTWATPCESLSITPICEGVRPFFPSL*ICSFTSSAVNFNQVGTLRR 116
           FL +T +T A PC++  I+     + P  P+L    FTS+   F  V T+RR
Sbjct: 16  FLSITTITTARPCKTFLISSYSLSITPENPNL-ESDFTST--RFVTVFTIRR 64


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +2

Query: 149 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNW 265
           C  C  TN   W+ G       CNA G  W     + N+
Sbjct: 7   CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNY 45


>At2g35780.1 68415.m04390 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 452

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 131 RDTAAVRQR-RXGRYPYQERAYDPCLRLFT 45
           ++ AA+R R    R+P+  RAYDPC   ++
Sbjct: 282 KEAAALRSRFSRVRHPWMWRAYDPCTEKYS 311


>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
           and genefinder
          Length = 315

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 143 IDCRRCKGTNLQTWKEGSHSLTNWCNAEG 229
           + C  C+ T    W+EG +     CNA G
Sbjct: 215 LKCTHCETTTTPQWREGPNGRKTLCNACG 243


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 164 GTNLQTWKEGSHSLTNWCNAE 226
           GTN ++ KE   SLT+W  AE
Sbjct: 70  GTNNESMKETGQSLTSWVEAE 90


>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 793

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 263 SYESYLGNSM*IPQHYTNL*GSETLLSKFVNL 168
           +YESY+G  M + QHY +   S+T L   V L
Sbjct: 308 NYESYVGQRMDVVQHYIHQAVSDTKLENPVLL 339


>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
           similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
           [Methylovorus sp.]
          Length = 419

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 149 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPS 250
           C  C G  L   K+GS ++   CN +G    CP+
Sbjct: 232 CSTCYGRGLVAHKDGSDTICTNCNGKG-KLPCPT 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,026,352
Number of Sequences: 28952
Number of extensions: 218719
Number of successful extensions: 619
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)