Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_E06
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             135   3e-32
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              109   2e-24
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   8e-24
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   2e-23
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         41   0.001
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         38   0.005
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.067
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.089
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         33   0.15 
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.47 
SB_55445| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  135 bits (327), Expect = 3e-32
 Identities = 67/125 (53%), Positives = 78/125 (62%)
 Frame = +1

Query: 280 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 459
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 460 GEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAG 639
           G GYK S FHRVIKNFMIQ             SIYG+ F+DENF LKHYG GWL MANAG
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAG 126

Query: 640 KDTNG 654
           K+TNG
Sbjct: 127 KNTNG 131


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  109 bits (262), Expect = 2e-24
 Identities = 55/109 (50%), Positives = 67/109 (61%)
 Frame = +1

Query: 328 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 507
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 508 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
           M Q            +SIYG +FEDENF LKH GAG LSMAN+G +TNG
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNG 242


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  107 bits (257), Expect = 8e-24
 Identities = 65/143 (45%), Positives = 82/143 (57%), Gaps = 18/143 (12%)
 Frame = +1

Query: 280 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPK 420
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF              +++  
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67

Query: 421 TTENFFQL-----AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE 585
           T   +F        +  +G GYK S FHRVI++FMIQ            +SIYG++F DE
Sbjct: 68  TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127

Query: 586 NFKLKHYGAGWLSMANAGKDTNG 654
           NFKL+HYGAGWLSMANAGKDTNG
Sbjct: 128 NFKLQHYGAGWLSMANAGKDTNG 150


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  105 bits (253), Expect = 2e-23
 Identities = 57/110 (51%), Positives = 64/110 (58%)
 Frame = +1

Query: 325 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 504
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 505 FMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
           FM Q            +SIYG +F DENF LKH G G LSMANAG  TNG
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNG 108


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +1

Query: 556 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
           S+YG  FEDE+F + H   G + MAN G+ TNG
Sbjct: 51  SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNG 83


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 19/33 (57%), Positives = 21/33 (63%)
 Frame = +1

Query: 556 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNG 654
           SIYG  F DE F+ KH     LSMAN G +TNG
Sbjct: 31  SIYGGTFGDECFEFKHERPMLLSMANRGPNTNG 63


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +1

Query: 373 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 501
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +1

Query: 373 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 516
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQ 75


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 556 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNG 654
           SI+G  FEDE  + L+H     +SMANAG +TNG
Sbjct: 8   SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNG 41


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +1

Query: 379 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 492
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_55445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 360 LHVKAHLMSNFRSFGNFIRFGTSDEQQNSLKPL*GYP*LKRV 235
           LH K   M+N  ++G F+  GT+D +QN    +  YP +K++
Sbjct: 68  LH-KTSGMTNRNAYGTFLTLGTTDNKQN-YSTIKCYPHIKKI 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,488,014
Number of Sequences: 59808
Number of extensions: 348266
Number of successful extensions: 470
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)